Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45970 312 / 1e-107 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT4G38400 308 / 7e-106 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 299 / 1e-102 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G17030 168 / 2e-51 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT1G65680 110 / 9e-29 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G20750 107 / 2e-27 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 105 / 6e-27 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT1G65681 89 / 6e-21 EXPB6 beta expansin 6 (.1) AT3G60570 87 / 2e-20 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1) AT2G45110 87 / 6e-20 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022639 [exp] 499 / 0 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10023968 [exp] 398 / 2e-141 AT3G45970 301 / 4e-103 EXPANSIN L1, expansin-like A1 (.1) Lus10025116 [exp] 250 / 9e-85 AT4G38400 187 / 2e-60 EXPANSIN L2, expansin-like A2 (.1) Lus10030931 [exp] 197 / 2e-62 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10001009 [exp] 184 / 3e-57 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 181 / 2e-56 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 177 / 9e-55 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10001244 [exp] 171 / 1e-51 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10011012 [exp] 166 / 1e-50 AT4G17030 219 / 2e-71 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141400 [exp] 394 / 1e-139 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 371 / 5e-131 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.001G147200 [exp] 187 / 1e-58 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G087000 [exp] 186 / 4e-58 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.003G083200 [exp] 185 / 8e-58 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 180 / 5e-56 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.019G101900 [exp] 115 / 1e-30 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.013G134300 [exp] 115 / 1e-30 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.014G066300 [exp] 105 / 5e-27 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.006G108000 [exp] 76 / 3e-16 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10003336 pacid=23148041 polypeptide=Lus10003336 locus=Lus10003336.g ID=Lus10003336.BGIv1.0 annot-version=v1.0 ATGGCTAATCTTTCATTAATTTCCTCCCCGTTCCTCCTCCTACTGACCATCATCTCATCAGCAACAGCCTGCGATCGCTGTGTTCATAAAACCAAAGTCG CTTACTTCTCCACATCCTCTGCTCTTTCTAATGGTGCTTGTGGCTACGGTTCCTTGGCGTTTAGATTCAACGCCGGCCAACTCGCGGCTGCTATCCCTTC CGTTTACAAGAATGGCGCCGGCTGCGGTGCTTGCTTCCAGATTAGATGCAAGAACCCTAGCTTATGCAGTACCAAGGGAACTACTGTAATGGTCACAGAC CTTAATACGAGTAACAACACAGATTTCGTTCTTAGCCGTACAGCTTTCAGTGCCATGGCTAGCAAGGGGAAAGCTTCAGACGTTTTGAAACTTGGTGTCA CTGATGTCGAGTACAAAAGGGTGCCATGTGATTTGAAGGCCAAGAACTTGACATTGAGAGTGGAGGAATCAAGCCAGAAGCCACACTACTTGGCCATCAA GGTGCTACACCAAGGAGGCCAAACCGAGATTGTAGCGATGGACGTAGCTAGAGTAGGTTCTTCGAACTGGGCCTTCCTGAGCAGGAATTACGGGGCCGTT TGGGACACGAGCCGTGTCCCTATAGGACCACTTCAGTTCAGGTTTGTGGTGACGGGCGGGTTCGATGGGAAGTGGGTATGGGCGCAGAAGGCGGTCCTTC CTGAGGATTGGAAGAACGGGATGGTCTACGACACTGGGCTGCAGATCGATGACATTGCTCAAGAGCCTTGCTCGCCTTGTGACGATTCGAATTGGAAGTG A
AA sequence Show only first row Show all	>Lus10003336 pacid=23148041 polypeptide=Lus10003336 locus=Lus10003336.g ID=Lus10003336.BGIv1.0 annot-version=v1.0 MANLSLISSPFLLLLTIISSATACDRCVHKTKVAYFSTSSALSNGACGYGSLAFRFNAGQLAAAIPSVYKNGAGCGACFQIRCKNPSLCSTKGTTVMVTD LNTSNNTDFVLSRTAFSAMASKGKASDVLKLGVTDVEYKRVPCDLKAKNLTLRVEESSQKPHYLAIKVLHQGGQTEIVAMDVARVGSSNWAFLSRNYGAV WDTSRVPIGPLQFRFVVTGGFDGKWVWAQKAVLPEDWKNGMVYDTGLQIDDIAQEPCSPCDDSNWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	0	1
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	1.0	0.9324
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10039402 [exp]	2.4	0.8315
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	3.5	0.8286
AT4G38810			Calcium-binding EF-hand family...		Lus10042380 [exp]	4.2	0.7723
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	4.9	0.8167
AT5G17350			unknown protein		Lus10035268 [exp]	6.7	0.8293
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	7.4	0.8253
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	8.7	0.7753
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	10.1	0.7724
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	11.2	0.7295

Compare expression of checked genes

Lus10003336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.