Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22800 763 / 0 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT1G50200 255 / 7e-71 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT1G29500 80 / 3e-17 SAUR-like auxin-responsive protein family (.1) AT1G29420 72 / 1e-14 SAUR-like auxin-responsive protein family (.1) AT1G29450 70 / 8e-14 SAUR-like auxin-responsive protein family (.1) AT1G29460 68 / 6e-13 SAUR-like auxin-responsive protein family (.1) AT1G76190 64 / 5e-12 SAUR-like auxin-responsive protein family (.1) AT5G27780 64 / 1e-11 SAUR-like auxin-responsive protein family (.1) AT1G29490 62 / 2e-11 SAUR-like auxin-responsive protein family (.1) AT1G29430 60 / 2e-10 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022640 [exp] 954 / 0 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10010210 [exp] 249 / 1e-68 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2) Lus10017408 [exp] 250 / 1e-67 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10023970 [exp] 74 / 5e-15 AT1G29450 97 / 2e-26 SAUR-like auxin-responsive protein family (.1) Lus10025114 [exp] 72 / 2e-14 AT1G29450 99 / 4e-27 SAUR-like auxin-responsive protein family (.1) Lus10023969 [exp] 69 / 3e-13 AT5G27780 96 / 1e-25 SAUR-like auxin-responsive protein family (.1) Lus10034570 [exp] 67 / 7e-13 AT1G76190 122 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10025115 [exp] 66 / 2e-12 AT1G29430 88 / 6e-23 SAUR-like auxin-responsive protein family (.1) Lus10021825 [exp] 61 / 1e-10 AT1G76190 110 / 1e-32 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141300 [exp] 811 / 0 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Potri.005G094300 [exp] 241 / 4e-66 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2) Potri.009G140900 [exp] 87 / 1e-19 AT1G29510 139 / 3e-43 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.017G043400 [exp] 86 / 4e-19 AT5G27780 141 / 8e-44 SAUR-like auxin-responsive protein family (.1) Potri.009G141000 [exp] 79 / 6e-17 AT1G29500 122 / 2e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G141201 [exp] 73 / 9e-15 AT5G27780 132 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G181400 [exp] 72 / 2e-14 AT1G29450 132 / 4e-40 SAUR-like auxin-responsive protein family (.1) Potri.002G064300 [exp] 71 / 4e-14 AT1G29510 109 / 2e-31 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1) Potri.017G043500 [exp] 69 / 2e-13 AT5G27780 120 / 1e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G141100 [exp] 68 / 4e-13 AT1G29510 117 / 8e-35 SMALL AUXIN UPREGULATED 68, SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein PF02272 [flax] [poplar] DHHA1 DHHA1 domain CL0040 [flax] [poplar] tRNA_synt_II PF01411 [flax] [poplar] tRNA-synt_2c tRNA synthetases class II (A) CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Lus10003337 pacid=23148035 polypeptide=Lus10003337 locus=Lus10003337.g ID=Lus10003337.BGIv1.0 annot-version=v1.0 ATGAAGCTCATCAAGATGGCCAAGAAATGGAGGAACCAAGTTGCCACAAAGAAGAACATAATCTCATTAGCTCCATTGTCCCCAAGAAGCTACTCCACCA AAGGCCACTTTGCAGTCTACACAATGGAAGACCAGAAACGTTTCATGGTTCCAATTCTTTGCTTGGACAGCCAAGCCTTCAGACAATTGTTGGAAATCTC TGAGGAAGAGTTTGGGCCACCCGGTAATGGGTCCATCAGGCTGCGCTGTGATGGGCCTTCCGTCGAGTGCTTGGTTTCCTTGATTAGACGAGCCGCCGAC GATGGCCATCTGTTCAGGGCCATGATTACGTGTGTTTGTAAAGGCCGTAGGATTTCATCTTCGTGCTCATCTTTCGAATACCGCCGAGGAAGGACCAATA ACAGCCAACATCTCTTCTCAACTTTACCCACTTTCCAAGCCGTGGTGGCGGGAATCACCATAGCCATAGCCATGGCTGGCGGTCTCAAACTCTACAGTAC CATCCATGGCGGGAAATCTCTCTACCCATTTCCCGTCGCCTCCTCCTCTTCTTCTTCTTCAACCTTAATCGCAACAAAACCCAACTACCTTCTCCCCCCT GCATCAGTTCAGCCAGTGACTGACGAGGGGAAGAAATGTGAGGAGAATTCGGTTAGTGGAGATTCGATTCGACGAAGGTTTATCGAATTCTACTCTTCCC GTGGCCATAAGATTCTCCCAAGTTCATCTCTTGTCCCTGACGATCCAACTGTTCTGCTCACCATAGCAGGGATGCTTCAGTTCAAACCTATCTTCCTTGG CAAGGCCCCGAGGCAGGTGCTTCGAGCAACGACTGCGCAAAGGTGCATTCGAACGAACGACATAGAGAACGTTGGCCGAACATCTAGGCATCAGACGTTC TTCGAGATGCTTGGGAATTTCAGCTTTGGAGATTACTTCAAGAGGGAAGCCATAAGATGGGCTTGGGAGCTTTCTACAAAGGAATTTGGGCTTCCACCTG ACAAAGTGTGGATTAGTGTATACGAAGACGATGATGAAACATTCAAGATATGGCATGAGGAGATCGGTGTCCCTGTCGAGCGAATACTAAGAATGGGCGA AGAAGACAATTTCTGGACGAGTGGTCCAACAGGTCCTTGCGGTCCATGTACTGAGCTTTACTATGATTTCCATCCTGAAATGGGTAGCAATGAAGTGGAT CTTGGAGATGACAGTAGATTCATAGAGTTCTACAATCTAGTGTTCATGCAGTACAATAGAATGGATGATGGATCGCTTGAACCGTTAAAACAACGAAACA TAGATACTGGCCTTGGTCTAGAACGGTTGGCTCGCATCCTCCAAAAGGTTCCAAACAATTATGAGACTGACTTGATCTATCCCATCGTACAAAAGGCATC AGAGTTGGCAAATGTTCCATACCATGGTGCTACTGATGAGAAGAAAATGAAACTTAAAGTATGTCGTGAAATCTGTTTCCTTGAGGAGAAGGCATCTCGC ATTATCGGAGAGCTGCGAAGAGAAGAGCTTCGCTTTGTACTAACTCTGGAGAGAGGAGAGAAGCTACTTGAACAGAAGTTAGCAGAAGCATTATCAAGCG CCAAACATAGTGGGGATTCACCTTGCTTGACTGGAAATGATGTGTTCCTGTTATACGACACTTTTGGATTCCCAGTTGAGATCACTGCAGAAGTTGCTGA AGAGAAAGGCATAGAGATAGACATGGAGGGTTTCTATGTTGAGATGGAGAATCAAAGGCGCCAGTCACAGGCAGCACACAATGTTGTTAAACTTAATGTT GAAAACGGCGGGGATCTTGCTGAAATGGTTGCTGATACGGAGTTTCTGGGATACAATACCCTTTCGACAAGGGCAATAGTGCAGAGCTTGTTGGTGAATG GGAAGCCGGTGCTGCAGGTTTCTGAAGGGAGTGAAGTAGAAGTTCTGCTCAACAGGACACCATTTTATGCCGAGTCAGGTGGTCAGATTGGTGATCATGG CTATCTCTATGTAACAGCAGAGAAAAGTGAAACCAGAGCAGTTGTACAGATTGAAGATGTTAAAAAATCTCTTGGTAGTGTATTTGTTCACAAGGGGACC ATCAAAGAAGGCGTCTTGGAAGTTGGCAAAGAAGTGGAAGCCACTGTAGATTCAAAACTAAGGCAACGAGCTAAGGTTCATCATACTGCCACCCACTTGC TACAATCTGCACTGAAGAAAGTTATCGGTGAGGAGACATCACAAGCTGGTTCTTTGGTAGCTTTTGATCGTCTCAGATTCGATTTCAACTTTCATCGGCC ACTAGTTGATAGCGAGCTGGAAGAAATCGAGGGATTGATAAATGGATGGATTGGTGATGCAACGCTGCTTCAAACTAAAGTCATGCCCTTGACTGATGCT AAAAGGGCTGGTGCCACTGCCATGTTTGGAGAAAAATATGGAGAGGAGGTGCGTGTTGTGGAGGTTCCTGGTGTATCTATGGAACTCTGTGGTGGAACTC ATGTCAACAACACTTCGGAAATTCGCGCCTTCAAGATCATATCAGAACAGGGGATTGCGTCGGGAATCAGGCGAATAGAAGCGGTAGCTGGTGAAGCTTA CATAGAGTATATCAATGGAAGAGATTCCCAGTTGAGACGGCTATGTTCCACTCTCAAAGTGAAAGCGGAAGAGGTTTCGACCAGGGTAGATAACCTGTTA GAAGAACTGAGAGCCGCAAGAAACGAAGCTTCAGCATTGCGTTCGAAAGCTGCTGTGTACAAAGCATCCATTATCTCAAGCAATGCAGTCTCCGTGGGAG ATTCAACATCAATCAGGGTTCTAGTTGAGAACATGGACGACATTGATGCCGATTCACTAAAAAGCGCAGCGGAATACTTGGTCGAAACGCTGCAAGAGCC AGCAGCCGTGGTCTTGGGATCATCTCCCGGTGAAGGGAAGGTGAGCTTAGTAGCAGCATTCTCTCCAGGAGTTGTGAAGTTAGGTGTTCAGGCCGGGAAG TTCATTGGCCCTATCGCGAAATTATGCGGCGGAGGTGGCGGTGGACGGCCTAACTTCGCTCAGGCTGGCGGGAGGAAGCCCGAGAATCTCTCGAGCGCGT TGGAGAAGGCTCAAACCGAACTTGTATCAGTTCTTGCAGAAAAGGCCGGTCAATGA
AA sequence Show only first row Show all	>Lus10003337 pacid=23148035 polypeptide=Lus10003337 locus=Lus10003337.g ID=Lus10003337.BGIv1.0 annot-version=v1.0 MKLIKMAKKWRNQVATKKNIISLAPLSPRSYSTKGHFAVYTMEDQKRFMVPILCLDSQAFRQLLEISEEEFGPPGNGSIRLRCDGPSVECLVSLIRRAAD DGHLFRAMITCVCKGRRISSSCSSFEYRRGRTNNSQHLFSTLPTFQAVVAGITIAIAMAGGLKLYSTIHGGKSLYPFPVASSSSSSSTLIATKPNYLLPP ASVQPVTDEGKKCEENSVSGDSIRRRFIEFYSSRGHKILPSSSLVPDDPTVLLTIAGMLQFKPIFLGKAPRQVLRATTAQRCIRTNDIENVGRTSRHQTF FEMLGNFSFGDYFKREAIRWAWELSTKEFGLPPDKVWISVYEDDDETFKIWHEEIGVPVERILRMGEEDNFWTSGPTGPCGPCTELYYDFHPEMGSNEVD LGDDSRFIEFYNLVFMQYNRMDDGSLEPLKQRNIDTGLGLERLARILQKVPNNYETDLIYPIVQKASELANVPYHGATDEKKMKLKVCREICFLEEKASR IIGELRREELRFVLTLERGEKLLEQKLAEALSSAKHSGDSPCLTGNDVFLLYDTFGFPVEITAEVAEEKGIEIDMEGFYVEMENQRRQSQAAHNVVKLNV ENGGDLAEMVADTEFLGYNTLSTRAIVQSLLVNGKPVLQVSEGSEVEVLLNRTPFYAESGGQIGDHGYLYVTAEKSETRAVVQIEDVKKSLGSVFVHKGT IKEGVLEVGKEVEATVDSKLRQRAKVHHTATHLLQSALKKVIGEETSQAGSLVAFDRLRFDFNFHRPLVDSELEEIEGLINGWIGDATLLQTKVMPLTDA KRAGATAMFGEKYGEEVRVVEVPGVSMELCGGTHVNNTSEIRAFKIISEQGIASGIRRIEAVAGEAYIEYINGRDSQLRRLCSTLKVKAEEVSTRVDNLL EELRAARNEASALRSKAAVYKASIISSNAVSVGDSTSIRVLVENMDDIDADSLKSAAEYLVETLQEPAAVVLGSSPGEGKVSLVAAFSPGVVKLGVQAGK FIGPIAKLCGGGGGGRPNFAQAGGRKPENLSSALEKAQTELVSVLAEKAGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	0	1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	1.0	0.9654
AT2G21960			unknown protein		Lus10005779 [exp]	1.4	0.9599
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	3.5	0.9534
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	3.5	0.9568
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	4.2	0.9532
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	4.5	0.9533
					Lus10030090 [exp]	5.9	0.9409
AT5G13720			Uncharacterised protein family...		Lus10016380 [exp]	6.5	0.9299
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	9.0	0.9345
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	9.8	0.9291

Compare expression of checked genes

Lus10003337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.