Plant FIBer expression Database

Lus10003340 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20450 41 / 0.0002 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022643
[exp]
213 / 4e-71 ND 46 / 3e-06
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00257 Dehydrin Dehydrin
Representative CDS sequence
>Lus10003340 pacid=23148052 polypeptide=Lus10003340 locus=Lus10003340.g ID=Lus10003340.BGIv1.0 annot-version=v1.0
ATGGCGGATCAGAACCATAAGCAAAACGGGTGTGAAGTAGAAGACCAAGCCGGAGCTGGGCTATGCGGTCTCCTTTCGAGGAAGAAAGCCACCGAAGACG
GTGGTCAGGATGATCAAGAGAAGAATGTTGTTTCGAGCAGTGATGCAAAACACGGCGGACCTCTTTCTTCCCTCGCCGACCACCTCCGCCGTTCTGATAG
TACCTCGTCAAGTGAAGAAGAAGAAGTTGAAGGAGTGGGAGGGGAGAAAAAGAGGAAGAAGAAAGGGTTGAAGGAGAAGATAAAGAAGAAGATGTCAATA
GAAAAGGAAGCTGAAGTGACAATAGAGATAATGCATGAAGAAGAAGATGAGAAGAAAGGGTTCATGGAGAAGATCATGGAAAAGCTCCCACTCAACGGCC
ACGAGGCGAATAAGCCGGACGACGTCGAGATCGAGTCCAAAAAGGGTGGGATGTTGGACATGATCAAGGAGGAAATTCAAGGAGGGATCAATAAGGTGAA
TGGAGATGATCATCATGAGAGAAAGAAGGAAGTTTGA
AA sequence
>Lus10003340 pacid=23148052 polypeptide=Lus10003340 locus=Lus10003340.g ID=Lus10003340.BGIv1.0 annot-version=v1.0
MADQNHKQNGCEVEDQAGAGLCGLLSRKKATEDGGQDDQEKNVVSSSDAKHGGPLSSLADHLRRSDSTSSSEEEEVEGVGGEKKRKKKGLKEKIKKKMSI
EKEAEVTIEIMHEEEDEKKGFMEKIMEKLPLNGHEANKPDDVEIESKKGGMLDMIKEEIQGGINKVNGDDHHERKKEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G50980 XERO1 dehydrin xero 1 (.1) Lus10003340
[exp]
0 1
AT5G42905 Polynucleotidyl transferase, r... Lus10006008
[exp]
9.9 0.7448
AT1G52790 2-oxoglutarate (2OG) and Fe(II... Lus10005776
[exp]
12.2 0.7185
AT1G68540 TKPR2, CCRL6 tetraketide alpha-pyrone reduc... Lus10035016
[exp]
33.3 0.7596
AT1G49320 ATUSPL1 unknown seed protein like 1 (.... Lus10032324
[exp]
38.4 0.7289
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10001050
[exp]
50.3 0.7422
AT3G14260 Protein of unknown function (D... Lus10008485
[exp]
85.4 0.7276
AT4G16563 Eukaryotic aspartyl protease f... Lus10028941
[exp]
85.9 0.7018
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Lus10003288
[exp]
115.5 0.6975
AT1G28710 Nucleotide-diphospho-sugar tra... Lus10032455
[exp]
137.8 0.6924
AT2G29040 Exostosin family protein (.1) Lus10016532
[exp]
149.2 0.6770

Lus10003340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.