Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41990 196 / 5e-60 unknown protein AT4G35170 163 / 1e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G45688 130 / 1e-34 unknown protein AT5G42860 129 / 3e-34 unknown protein AT3G24600 90 / 2e-19 Late embryogenesis abundant protein, group 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022644 [exp] 398 / 4e-139 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10009749 [exp] 138 / 5e-38 AT5G42860 256 / 2e-84 unknown protein Lus10010232 [exp] 135 / 1e-36 AT1G45688 416 / 3e-146 unknown protein Lus10035869 [exp] 132 / 2e-35 AT1G45688 219 / 3e-69 unknown protein Lus10029743 [exp] 127 / 2e-33 AT1G45688 301 / 4e-101 unknown protein Lus10025793 [exp] 126 / 2e-33 AT1G45688 221 / 5e-70 unknown protein Lus10009850 [exp] 111 / 2e-29 ND / Lus10034926 [exp] 111 / 1e-27 AT1G45688 182 / 5e-55 unknown protein Lus10023652 [exp] 110 / 3e-27 AT1G45688 183 / 2e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G140600 [exp] 275 / 4e-91 AT2G41990 232 / 5e-75 unknown protein Potri.004G180900 [exp] 274 / 2e-90 AT2G41990 256 / 1e-84 unknown protein Potri.014G026800 [exp] 136 / 6e-37 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 135 / 6e-37 AT1G45688 284 / 1e-94 unknown protein Potri.007G045000 [exp] 129 / 2e-34 AT1G45688 273 / 4e-90 unknown protein Potri.003G052900 [exp] 125 / 3e-33 AT1G45688 176 / 6e-53 unknown protein Potri.001G183600 [exp] 124 / 2e-32 AT1G45688 185 / 4e-56 unknown protein Potri.006G160100 [exp] 113 / 1e-28 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.009G061300 [exp] 52 / 4e-07 AT3G08490 209 / 7e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10003341 pacid=23148060 polypeptide=Lus10003341 locus=Lus10003341.g ID=Lus10003341.BGIv1.0 annot-version=v1.0 ATGCACGCGAAGACCGATTCCGATGGGACGACTAGCGTGGATACCACGTGGGGGACGGGGGCGCCGCCCACTCGCCTGCCGGTGTACTACGTCCAGAGCC CTTCGAACCACGACGCCCTGGAGAAAATGTCGTACGACGACGGCGGGTCGACCCCCGCTGGATCTCCGCAGCACCATTACTACCACTGCTCCCCAATCCA CCACTCCCGCGAGTCCTCCAATTCCAGATTCACCGCCGCGCTTAAAACCCCAAGGAATCTCAACTCCTCCTGGAAGCACGTCCAGCTCAACGGCCACGGT GGCGGAATGGGGGATGAGGATGAAGAGGAGGAGGATGAGTTTAACGGTGATGGCGGTGGGAAGAGTAACGGCGTGAGGGTTTACTTGGTTGGATTCTGTG TCTTCGTTTTGGTGTTTACTCTGTTTTGCTTGATCCTCTGGGGCGCCAGCAAGTCTTACCAGCCCAAATTTTCCGTCAAGAGCATGGTGTTCGAGAATTT TAATGTACAAGCAGGGAATGATGAATCAGGAGTGCCAACAGACATGCTCACTTTGAACTCAACGGTCAAGATTCGTTACAGGAACCCAGGCACTTTCTTT GCCGTCCACGTCACCTCCACCCCTCTTGAGCTCTACTATTTTCAACTCAAACTAGCCTCTGGCCAGATGAAGAAGTTTACGCAGTCGAGGAAGAGCGGGA GGACCGTGGCGACGGTGGTGAGTGGACACCAAGTCCCCTTGTACGGCGGGATCTCTGCCCTAGCCAATGCCTACAACAACATCAACAAGATTTCATTTTG GATTCTTGTTACAGTGTTGTCTAATTGCTCTCTTTTGGAGGGAAAGTTGCACTCTCGTGGAGAGTTCCTCCATCTGAAAACCCTAGCCGTAATTATCGAA CCCGTCGACATCATGATTCCGTCACAACCTATCACGTCTGTCAAGAAACAGCGCAGATGCGATCTTACCATTGCCGACCCAAGGGAGACGGATGTTGAAG GAAGGTTCTCGAAACACCAGAGAACTCAGCCAAGGCTCCGCCTCTGTAACCGGTCTACCCCAAGGGACTGGTCATTCACACGGATGCGTTGTCAAGACGG CTAA
AA sequence Show only first row Show all	>Lus10003341 pacid=23148060 polypeptide=Lus10003341 locus=Lus10003341.g ID=Lus10003341.BGIv1.0 annot-version=v1.0 MHAKTDSDGTTSVDTTWGTGAPPTRLPVYYVQSPSNHDALEKMSYDDGGSTPAGSPQHHYYHCSPIHHSRESSNSRFTAALKTPRNLNSSWKHVQLNGHG GGMGDEDEEEEDEFNGDGGGKSNGVRVYLVGFCVFVLVFTLFCLILWGASKSYQPKFSVKSMVFENFNVQAGNDESGVPTDMLTLNSTVKIRYRNPGTFF AVHVTSTPLELYYFQLKLASGQMKKFTQSRKSGRTVATVVSGHQVPLYGGISALANAYNNINKISFWILVTVLSNCSLLEGKLHSRGEFLHLKTLAVIIE PVDIMIPSQPITSVKKQRRCDLTIADPRETDVEGRFSKHQRTQPRLRLCNRSTPRDWSFTRMRCQDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41990			unknown protein		Lus10003341 [exp]	0	1
AT4G33625			unknown protein		Lus10007070 [exp]	2.4	0.8427
AT3G18050			unknown protein		Lus10027253 [exp]	2.8	0.8337
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	3.9	0.8337
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	6.3	0.8107
AT3G18050			unknown protein		Lus10038961 [exp]	7.7	0.8065
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	9.5	0.8215
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	11.8	0.7818
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	14.0	0.8060
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	16.5	0.7715
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	16.5	0.8182

Compare expression of checked genes

Lus10003341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.