Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 1019 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G28470 860 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 855 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 842 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 763 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT3G52840 746 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 739 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G56870 730 / 0 BGAL4 beta-galactosidase 4 (.1) AT4G26140 727 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G20710 711 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022645 [exp] 1630 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10025108 [exp] 1176 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10023977 [exp] 1035 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025110 [exp] 875 / 0 AT5G63810 851 / 0.0 beta-galactosidase 10 (.1) Lus10041798 [exp] 834 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 833 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10015625 [exp] 830 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 827 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 825 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 1221 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 857 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 851 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 845 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 840 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 839 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 834 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 773 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.017G057900 [exp] 760 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 751 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10003343 pacid=23148037 polypeptide=Lus10003343 locus=Lus10003343.g ID=Lus10003343.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTTTTCTCCGTCTTCTTCTTTTTCTCGAGCTGGTTGTTGCTCTTCTTCTTCTTTGAAGTGGGTTCGGCGGGGAATGTGACTTACGATGGCC GATCTCTCATCATTGATGGGCAGAGGAAGCTCTTCATTTCCGCTTCCATTCACTACCCTCGAAGTGTTCCCGCGATGTGGCCGGGGTTGGTGCAGACTGC TAAGGAAGGTGGAGTGGATGTGATTGAGACTTACGTGTTCTGGAATGGCCATGAGATTGCTCCTTCAGTTTACAACTTTGAGGGGAGGTATGATCTGGTG AAGTTTGTGAAGATTGTTCAGAATGCTGGGATGCATTTAATTCTTCGCATTGGGCCTTTTGTTGCTGCTGAATGGAACTATGGGGGTGTGCCTGTTTGGT TACACTATATTCCTGGAACCGTGTTTCGAACAGATAACGAGAACTTTAAGAGATTCATGACATACATTGTGAACCTCATGAAGAAAGAGAAGCTGTTTGC TTCTCAGGGAGACTGGGCTGCTGCTTCTTCATTGCAGGTTGAGAATGAGTATGGATATTATGAGCAGTTCTACGGAGAAGGTGGGAAGCGATATGCCATG TGGTCGGCTCAAATGGCCGTTGCTCAAAATATCGGCGTTCCTTGGATAATGTGCCAGCAGTTTGATGCTCCTGACCCAGTGATTGATACTTGTAATGGTT TCTACTGCGATGCATTCAAACCTATTTCCCCACACAGGCCAAAGATTTGGACAGAAAACTGGCCAGGATGGTTTCAGTTATTTGGAGCCCCCAATCCTCA CAGGCCAGCTCAAGATGTTGCTTATGCTGTGGCTCGATTCTTCCAGAAAGGTGGTACTGTGAATAATTATTACATGTTCCTAAGTTTTCTTAAGAAATAT AACGCCTTAACTCCTGCTTCTTTCTGCTTGAGCCAGTATCATGGAGGAACGAATTTTGGCCGTACCGCTGGTGGACCATTCATTACAACTAGTTATGACT ATGAAGCCCCAATCGACGAGTATGGTATGCCGAACCAGCCGAAATGGGGACACCTTAGAGATCTCCACAAAGCTATAAAGTTATGTGAGAAAATGTTGCT AACCAGCAATTCAATCAATAGCTCCCTTGGACATTCCCAAGAGGCTGAAGTTTATGAAGATGGATCAGGAGCTTGTGTTGCCTTTCTAACTAACACAGAT GATAAGAACGACGTGACTGTCATGTTTAGGAACTCATCGTACCACTTGCCGGCTTGGTCAGTCAGCATTTTACCTGACTGCAAAAATGAAGTGTATAATA CTGCAAAGGTGACATCCCAAGCCACTGTGGTAAAAATGGTTTCTGAGAACTTGAGGTCCTCAGTGCAGTCATCAAAGAAAGACACGAAAACTCCAAACTG GGAAGTGTTTGTGGAGAAAGCAGGCATTTGGGGAGAGGCCGACCTGGTCAAAAATGGTTTGGATGATCACATTAACACCACAAAAGATGCCAGTGATTAC CTTTGGTACACTACAAGCTTTACCTGTGGTGAAGATGAAGCGTTCTTAAAACAAGGACGATCTCCGGTTCTCTTGATCGACTCGAAGGGTCATGCTCTCC ATGTTTTCGTCAATGGCCAACTTCAAGGTAGCGCATCTGGCAATGGCACAGTTTTCCCTTTCAGATACAAGAAACCCATCACTCTCAAGGCAGGGAAGAA CGAAATTTCGTTACTGAGCATAACTGTCGGCCTACCGACTGCTGGCCCTCGATACGAATGGATCCCAGCTGGACTTACTTACGTCAAGATTCAAGGGCTT AACAATGGCACAGTAGACTTGTCAAAGAACAATTGGACTTATAAGATTGGTTTGGAAGGAGAAAAGCTTGCTATATACACACCAGGCGGTATGAACCGCG TGAACTGGATCGCAACTCCAAATGTGCCGAAAATGCAGCCTTTGACATGGTATAAGGCTGCTGTGGAACCACCAACCGGAAATGAACCCATTGGACTAGA TATGCTCAATATGGGCAAAGGTCTAGCTTGGTTGAATGGAGAAGAAATCGGGAGATACTGGCCGAGGAAAAGCCCGAAAAACGGAAAATGTGTTGATGAA TGTGATTACAGGGGCAAGTTCATGCCGGATAAGTGTCTAACTGGATGCGGGAAACCCACACAGAGATGGTACCACGTTCCTCGGTCATGGTTCAAGCCAT CCGGTAACATACTAGTGATCTTCGAAGAGAAAGGTGGCGACCCTTCAAAGATCAAGTTCTCGAAGCGAAGAACGTCAGGAGTATGCGCTGCTGTCAGTGA GGATTACCCTTCCTACAATCTTCTCCCTCAAGCTGGGAATGCAACAAGTAAAACAGCCAGTGTTCATCTCAAGTGTCCTGAAGATACTCAGATATCCGCG GTGAAATTCGCCAGCTTCGGAACCCCAAAGGGAACCTGTGGTTCATACAAGATTGGAGATTGTCATGATCCCAACTCCATTTCTTCTGTAGAAAAGGAAT GTCTGAAGAGAAACGAATGCAGAATTGAAGTATCAGAAGAGAAGTTCATGAGCAAAGGGAGCTGCAAAGTAGGTGGTGGTGCTACTATGAAGAAGAAGCT TGCAGTAGAAGTAGTGTGTAGCTGA
AA sequence Show only first row Show all	>Lus10003343 pacid=23148037 polypeptide=Lus10003343 locus=Lus10003343.g ID=Lus10003343.BGIv1.0 annot-version=v1.0 MEKLFSVFFFFSSWLLLFFFFEVGSAGNVTYDGRSLIIDGQRKLFISASIHYPRSVPAMWPGLVQTAKEGGVDVIETYVFWNGHEIAPSVYNFEGRYDLV KFVKIVQNAGMHLILRIGPFVAAEWNYGGVPVWLHYIPGTVFRTDNENFKRFMTYIVNLMKKEKLFASQGDWAAASSLQVENEYGYYEQFYGEGGKRYAM WSAQMAVAQNIGVPWIMCQQFDAPDPVIDTCNGFYCDAFKPISPHRPKIWTENWPGWFQLFGAPNPHRPAQDVAYAVARFFQKGGTVNNYYMFLSFLKKY NALTPASFCLSQYHGGTNFGRTAGGPFITTSYDYEAPIDEYGMPNQPKWGHLRDLHKAIKLCEKMLLTSNSINSSLGHSQEAEVYEDGSGACVAFLTNTD DKNDVTVMFRNSSYHLPAWSVSILPDCKNEVYNTAKVTSQATVVKMVSENLRSSVQSSKKDTKTPNWEVFVEKAGIWGEADLVKNGLDDHINTTKDASDY LWYTTSFTCGEDEAFLKQGRSPVLLIDSKGHALHVFVNGQLQGSASGNGTVFPFRYKKPITLKAGKNEISLLSITVGLPTAGPRYEWIPAGLTYVKIQGL NNGTVDLSKNNWTYKIGLEGEKLAIYTPGGMNRVNWIATPNVPKMQPLTWYKAAVEPPTGNEPIGLDMLNMGKGLAWLNGEEIGRYWPRKSPKNGKCVDE CDYRGKFMPDKCLTGCGKPTQRWYHVPRSWFKPSGNILVIFEEKGGDPSKIKFSKRRTSGVCAAVSEDYPSYNLLPQAGNATSKTASVHLKCPEDTQISA VKFASFGTPKGTCGSYKIGDCHDPNSISSVEKECLKRNECRIEVSEEKFMSKGSCKVGGGATMKKKLAVEVVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	0	1
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	1.0	0.9526
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	2.4	0.9280
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	2.8	0.9402
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	4.2	0.9169
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	8.5	0.9254
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10041457 [exp]	10.2	0.8963
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	10.5	0.9080
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	12.2	0.9127
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	13.4	0.9024
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	17.7	0.9079

Compare expression of checked genes

Lus10003343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.