Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06000 248 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G65560 155 / 6e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 150 / 2e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 144 / 6e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09680 139 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 138 / 8e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 137 / 1e-36 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 133 / 1e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63230 129 / 2e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 133 / 3e-35 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004533 [exp] 378 / 7e-130 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10004615 [exp] 366 / 4e-125 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10012068 [exp] 145 / 3e-39 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 145 / 3e-39 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 143 / 1e-38 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 139 / 2e-37 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10009201 [exp] 130 / 4e-36 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 133 / 2e-35 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039056 [exp] 134 / 3e-35 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G141800 [exp] 263 / 9e-85 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.013G034300 [exp] 143 / 1e-39 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 142 / 9e-39 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 141 / 3e-38 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 140 / 4e-38 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 140 / 7e-38 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 139 / 1e-37 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 139 / 2e-37 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G049400 [exp] 139 / 4e-37 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G014500 [exp] 139 / 4e-37 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003347 pacid=23148054 polypeptide=Lus10003347 locus=Lus10003347.g ID=Lus10003347.BGIv1.0 annot-version=v1.0 ATGGTTACTACTTTTAACGGGCTGATCGACTGCTATGGGAAGATCAACGACATGGTTGCAGCAGAAGCCGTTTACGAAAAGATGGACCAGTTCAGTTGCT CTCCTGATGTGGTTACTTTCACTTCCTTAATCGATGGTTACTGTCGATGTGGACAGGTTAGCCTCGGTATGAAGCTCTGGGATGTGATGAGCGTAAGAAA CATGATTCCTAATGCGTATACATACGCTGTTCTAATTAACGCTCTTTGCAAGGAGAATAGACTTCACGAGGCCCGCAGACTTTTGACAGAACTGAAGTTT AGTAACGTTGTAGCAAAGGCATTCATGTACAATCCTGTAATTGATAGGTTTTGCAAAGCTGGCAATGTCGATGAGGCAAATGTCATTGCAAAAGAGATGG AAGAGACGTTTACCATACTTATTATCGGCCACTGTATGAAAGGTAGACTGTCTGACGCAACCGGTCTTCTCAATAAGATGCTGACCATCGGTTGCTCTCC TGATAACATTACCATTAGTTCATTGACATCCCGCCTTTTGAAAGCCGGGTTACCTACCGAAGCATTCCGAGCAGCAAATGTCATTGCAAAAGAGATGGAA GAGAAAAAGTGCGTTCCCGACAAAGTGACGTTTACCATACTTATTATCGGCCACTGTATGAAAGGTAGAATGTCTGACGCAACCGGTCTTCTCAATAAGA TGCTGACCATCGGTTGCTCTCCTGATAACATTACCATTAGTTCATTGACATCCCGCCTTTTGAAAGCTGGGTTACCTAAACATTGA
AA sequence Show only first row Show all	>Lus10003347 pacid=23148054 polypeptide=Lus10003347 locus=Lus10003347.g ID=Lus10003347.BGIv1.0 annot-version=v1.0 MVTTFNGLIDCYGKINDMVAAEAVYEKMDQFSCSPDVVTFTSLIDGYCRCGQVSLGMKLWDVMSVRNMIPNAYTYAVLINALCKENRLHEARRLLTELKF SNVVAKAFMYNPVIDRFCKAGNVDEANVIAKEMEETFTILIIGHCMKGRLSDATGLLNKMLTIGCSPDNITISSLTSRLLKAGLPTEAFRAANVIAKEME EKKCVPDKVTFTILIIGHCMKGRMSDATGLLNKMLTIGCSPDNITISSLTSRLLKAGLPKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10003347 [exp]	0	1
AT5G14880			Potassium transporter family p...		Lus10012888 [exp]	5.3	0.7164
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	70.9	0.6253
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	97.6	0.6131
AT4G36440			unknown protein		Lus10041785 [exp]	107.4	0.5858
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	169.4	0.5850

Compare expression of checked genes

Lus10003347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.