Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61590 48 / 2e-05 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G23950 47 / 3e-05 F-box family protein (.1) AT1G51290 44 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT5G36200 43 / 0.0008 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013987 [exp] 875 / 0 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10013986 [exp] 697 / 0 ND 55 / 7e-08 Lus10040838 [exp] 651 / 0 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10007302 [exp] 648 / 0 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10040816 [exp] 602 / 0 ND / Lus10007303 [exp] 501 / 4e-174 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10004929 [exp] 476 / 1e-163 ND / Lus10016522 [exp] 459 / 1e-152 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10013907 [exp] 405 / 4e-136 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 126 / 6e-31 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 89 / 2e-18 AT3G15910 58 / 5e-09 unknown protein Potri.009G132400 [exp] 77 / 1e-14 ND / Potri.005G043500 [exp] 54 / 2e-07 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.003G215900 [exp] 46 / 8e-05 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.007G027300 [exp] 45 / 0.0001 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.004G000900 [exp] 45 / 0.0002 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003349 pacid=23148046 polypeptide=Lus10003349 locus=Lus10003349.g ID=Lus10003349.BGIv1.0 annot-version=v1.0 ATGAGGATCAACGATTTGGAAACCGATCTTCTTGTAGAGATTCTAATCCGCCTCCCCAACCCCAGATCCAGCTCCCACTGTAAACTCGTCTGCAAGCGGT GGGACTCCCTGATCTCCAGTCCTCCCTTCAACCGCCGTTTCATTTCTCACCATCTGACCATGCACCGCCCACATATGCCGCTGGATCCATACGAGCTGAA ATCGATCATCCTCAGCTTTCTCCCTCCCCTGCCTTGTAGTTTTGGAAACGCTCTCACAGTTTTGGATTGCAACAAGGACTTGGTTTTATGCGGATTTTGG GATGTAGATTGCGACGACGGGGAACGTGGGAGATCGTACTTGGTGTGCAATCCATTTACGAAACAGTGGATCGCTCTTCCTTTAGCGCCTAGGAAGCATG TGGGTTATGTATCACCGGCCGCAAGGTTAGTCTGTGAACCCCGGATTTCTAATAAGCTTGATGTAGGTGGTGGAGATGACGACCAAGAAGCAGCATTTGT TTGTTCTGAGTATCGCTTCCGTGTGGTTTGTATTTATCAAGTCGCTGTACCGTACATAGCTTTTAAGCTAGACATGTTTTGTTCCGAGTCTGGACAATGG ACCAAGGAAGCTCTTGTCTCTGATAAATTTCAAATTAAAAGAGGATTAAAAGGTGTAATTTCCTGCAATGGGGAGTTGTTTTGGATGAAATCTATGCTGG GTCAGGAGGTTCGGAATTCTTCGGTGGCTGTGTTTAACCCTTTCCGCCTAGATAAGCCTCCCACTTCCATTGATAGTTCTGCATTCCGTGTGTATCCACT TTGGTTTATTTCAAGCTCACAAGGGGTGTTGCACGTAATTGCATTAGAAAATCAAACTGCACCTGCTCGTGCAAGCATCTGGAGACTCGAAGAAGACCGT AAATCTTGGAGGAAACAATATGAGGGGTTGGTGAACGAGACATCAAAGTGTGGTAACTATCAAATTGAGTGCTTTTATCGACCCTTTCTGCATCCAGATA AGCCGGAGATTGTCTTCTTCAATCCGCTTCGTTCTGACGAAAATAGTGCTATATTGTGCTGCGACTTGAGAACAGGAGAGGTAGAGTTCTTCGCCAAAGT AGAAGGGAAGCCTGATGTCTATCACCTTCAGGTGTTCCAGCCAAGGGTTTCCTGCTGGGCTACTCCAATTCCAAGGTACGAGGCGTTGCGAGGCTTGTAC GATGGAAGCTACAGCTTTTGGGTTCAGAGCACCAGTAAATCAAAATCAAAAACACACTCCGTCCCTCCCTTGCGCAATATTTGCAAGTTTATGAAATCAA CCTTTTACAAGGACTATATGAAAAACGTCACTGAAGAGGCAACTCTGGACATAGTGGCTGAAATCATTCAGCGGAGGAAGAAGAAAATCAGCAATGAGAT TATCATAAGAGAAAGGCAGCTGCCTCTTTTTCCATATGACAAGGAATTGGATGAACTAGAAACTGTTTTGAGACTTGTTGAAGCTGATATGGTCACTATT GGCAAACACAAGGAAGAAGTGATGTGCAAAACGTCATCAACAGAGCTTCTTTATCCTCCAGTCTCTATCAAAAGTGTCTGTACTAGGAACATGGTGGTTC CGAGTAGGAAGCGCCAACTCGGTGGGATGGTGATAACAGAAAGGAAGCAGCCTCGTTTTGCTGATGACAAGGAAGCTGGTTTCAAAGACGTTGTATCCTA TGTGGCCGCTGTTGGCAACCCGAAAGAAGTGGAGCAGGGACTTTTGTGTGAAACGTGGGCAGAGCTTCCTGATCATCCGGGGTTATCCTTTCCAGTGTCT ATCAAAAGTGTCTCTGCAGATTTAACTCCGAACATTCCGTGCAAAATCCACGGGATGGTTTTAAGAGAAAGGCTGCGCAAAATCCATAGGATGGTTATAA GAGAAAGGAAGCAGCCTCGTGTTCCTGATGACAAGGAAGCGGATTTCGAAGATGTTGACTCCTATATGACCGCTCTTGTCAAATGGAAAGAACTGTCGAG CTTGATGTCCTCAACACCTTATATTGAAACATCGGCAGAGATCCCTCATCCTCTAGGTAAAGTTGTGCTCTGA
AA sequence Show only first row Show all	>Lus10003349 pacid=23148046 polypeptide=Lus10003349 locus=Lus10003349.g ID=Lus10003349.BGIv1.0 annot-version=v1.0 MRINDLETDLLVEILIRLPNPRSSSHCKLVCKRWDSLISSPPFNRRFISHHLTMHRPHMPLDPYELKSIILSFLPPLPCSFGNALTVLDCNKDLVLCGFW DVDCDDGERGRSYLVCNPFTKQWIALPLAPRKHVGYVSPAARLVCEPRISNKLDVGGGDDDQEAAFVCSEYRFRVVCIYQVAVPYIAFKLDMFCSESGQW TKEALVSDKFQIKRGLKGVISCNGELFWMKSMLGQEVRNSSVAVFNPFRLDKPPTSIDSSAFRVYPLWFISSSQGVLHVIALENQTAPARASIWRLEEDR KSWRKQYEGLVNETSKCGNYQIECFYRPFLHPDKPEIVFFNPLRSDENSAILCCDLRTGEVEFFAKVEGKPDVYHLQVFQPRVSCWATPIPRYEALRGLY DGSYSFWVQSTSKSKSKTHSVPPLRNICKFMKSTFYKDYMKNVTEEATLDIVAEIIQRRKKKISNEIIIRERQLPLFPYDKELDELETVLRLVEADMVTI GKHKEEVMCKTSSTELLYPPVSIKSVCTRNMVVPSRKRQLGGMVITERKQPRFADDKEAGFKDVVSYVAAVGNPKEVEQGLLCETWAELPDHPGLSFPVS IKSVSADLTPNIPCKIHGMVLRERLRKIHRMVIRERKQPRVPDDKEADFEDVDSYMTALVKWKELSSLMSSTPYIETSAEIPHPLGKVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	2.0	0.7563
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	5.3	0.6619
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	7.8	0.7777
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10026517 [exp]	11.7	0.6375
AT4G24840			unknown protein		Lus10024203 [exp]	32.0	0.6739
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	35.6	0.6729
AT1G30890			Integral membrane HRF1 family ...		Lus10007418 [exp]	106.2	0.6387
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Lus10021188 [exp]	131.0	0.6306
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	144.4	0.6062
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	145.6	0.6236

Compare expression of checked genes

Lus10003349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.