Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58030 363 / 6e-129 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003634 [exp] 383 / 2e-136 AT5G58030 367 / 3e-131 Transport protein particle (TRAPP) component (.1) Lus10036292 [exp] 260 / 9e-88 AT5G58030 247 / 1e-83 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187300 [exp] 370 / 1e-131 AT5G58030 380 / 7e-137 Transport protein particle (TRAPP) component (.1) Potri.018G110000 [exp] 364 / 2e-129 AT5G58030 342 / 1e-121 Transport protein particle (TRAPP) component (.1) Potri.013G031000 [exp] 44 / 2e-05 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 41 / 0.0002 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10003350 pacid=23148058 polypeptide=Lus10003350 locus=Lus10003350.g ID=Lus10003350.BGIv1.0 annot-version=v1.0 ATGATAGGAGCAAGCAAGATCAAGCAGTACTCCAATGTCCTCGACAAACCCCTAAGCAAGGGCAAGCAAGAGGTTAGTCTGAGTGCTTTTGCGTTTTTGT TTTCGGAGCTCGTTCAGTACAACCAAACACAGGTTGACAATATTGCTGAGTTAGAACGAAGGTTGGAGGATGCAGGCTACGCTGTTGGAGCTCGAGTTCT TGAACTTCTTTGTCATAGAGAAAAGGGAAATAGACGTGAAACACGACTTCTGGGTATCTTGTCTTTCGTACACAGCACAGTGTGGAAGGTTTTATTTGGG AAAGTGGCTGATTCATTGGAGAAGGGAACCGAACATGAGGATGAATACATGATCAGCGAGAAAGAACTCCTTGTCAACAGATTCATTTCCATTCCAAAAG ACATGGGAACTTTCAACTGTGGCGCTTTTGTTGCTGGAGTTGTGAGGGGTGTGTTGGATGGTGCAGGTTTCCCTGCAGTTGTAACAGCTCATTTCGTTCC TATGGAAGGCCAGCAACGACCTCGGACCACCATTCTCATAAAATTTGCGGAAGAGCCACCAGGAAAATATTATGTCCATTACGGTAAACTTTGGCTCAGC AATGCTTTCCGTCTGTATGAAGAGAATTTTCAACTTAAGCTAGGTGATCATGTCCTTCCTTCCTCCTCCATCGCCGGCGTTATCTTCCTTCAATCCGTCT CTCTACGCCATGGCGATCGAGAACTGCTTCTCGGATTGGGATGTGCCGCTTATAGAATTCCATCGCCGTCTTAG
AA sequence Show only first row Show all	>Lus10003350 pacid=23148058 polypeptide=Lus10003350 locus=Lus10003350.g ID=Lus10003350.BGIv1.0 annot-version=v1.0 MIGASKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFG KVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGVVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEPPGKYYVHYGKLWLS NAFRLYEENFQLKLGDHVLPSSSIAGVIFLQSVSLRHGDRELLLGLGCAAYRIPSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	2.4	0.9195
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	4.5	0.8911
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	5.7	0.8511
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	6.0	0.9025
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	7.3	0.8927
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	8.1	0.8499
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10013349 [exp]	9.5	0.8672
AT5G14290			Mitochondrial ribosomal protei...		Lus10022331 [exp]	10.1	0.8199
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	10.7	0.8630
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	11.5	0.8753

Compare expression of checked genes

Lus10003350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.