Plant FIBer expression Database

Lus10003351 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28200 760 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004616
[exp]
1223 / 0 AT4G28200 758 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G040000
[exp]
853 / 0 AT4G28200 801 / 0.0 unknown protein
Potri.013G135300
[exp]
44 / 0.0003 AT4G03430 1470 / 0.0 STABILIZED 1, EMBRYO DEFECTIVE 2770, pre-mRNA splicing factor-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08640 U3_assoc_6 U3 small nucleolar RNA-associated protein 6
Representative CDS sequence
>Lus10003351 pacid=23148045 polypeptide=Lus10003351 locus=Lus10003351.g ID=Lus10003351.BGIv1.0 annot-version=v1.0
ATGGCGGACATTGTGCAGTACCGCCTGGAGCGCATGGTGGAGGAGCTCGATGACCTGGAGCGTCGAGGACTGTTCACCCGCCGGGAGATAGCTGAGATTG
TGAAGCAGAGGCGGAAGTTCGAATACAGATTGAAGCGGCCGAGTCCTCTGAAGCAGGACTATCTCACCTACATAGATTACGAAACTCAACTCGACAGGCT
TCGCCGCCTCCGAAAGAAGTCGGTATCCTGCGACCTGGACAAGAAGAACAACAAGAAGACGAAACTCTCCGTCTCCGACTTCACCGGAGTTTCCAGGATC
ATGGAGATTTACAGACTCGCCGTGATGAGGTACAAAGGAGATGTTGATCTCTGGATTCGCTATTTGGAGTTCTGCAAGGAGCGGAAGAACGGGAGGATGA
AGAAGGTCCTCGCACAACTGCTTAGGTTTCATCCGAAGGTCCCTGGAGTGTGGATTTATGCTGCAGCTTGGGAATTCGACCATAATCTAAATGCTGAAGC
AGCTCGTGCTCTTATGCAAAGTGGTTTGAGGGTATGCCCAACTTCAGAGGATCTCTGGGTGGAGTATCTCCGGATGGAGCTGACTTACCTCAACAAGTTG
AAAGCACGAAGAGTTGCTCTTGGAGAGGGCAAGGGAACTCTGGTTCGTGAAGATGGAGATGCTATTGATGACAAACGATGGAAAGATGAAAACAGGGATG
TATTTATGTCACTTGATGAAGAAGCAAAGCACAACACTGATGATGATGATGAAGAGTCGGAGGGGAAAACAGATTTGTTTAAGGAGCAAGGTCTTCTCAT
TCTCCGGGCTGTTTACAGTGGCGCAGTGGAGGCCTTGCCATCAAGCTTCAGCCTTAGGCAACGGTTATTTGAGATATTGGAAGCAACAGACTTGGCACAT
TCAGAAGACATGCGTCAACAGATCCTAAGTGATATGAAAAGAGACTTCTCCAGAGATCCCAAGTACTGGGAATGGCTTGCTAGACTTGAGGTGAGCAGTC
CCGGAAGTAACCAGGGTATAGTTGGTGATGCCATGTTTGAGAAACTACAAAAGGCAGCAAAGGTCTATGAAGAAGCATTAGAAGTTCTTCCTTCTCCAGT
TATGTTTAACATGTACACAAAGTTCTTGATGGATATTGTTGCCCCTAAAAATGAAAACACCCAGTTGTCTGTTTGTACACAAGATTGGGTTTCACGCCTT
CTGTCAGCGTATGAGAAGGCTGAGCTGGTGGGTTCAATGTCAGAGGATCTTGCTTGTGATTATGTTTCATTTTATTTGCACCTGGGAAAATTTGATAAAG
CCCGGCAACTAGCAAGAGAGCTTTGCTGCGGAGAGCTTTCAAAGTCAGCTAAGTTATGGTTCTTAAGGGCCTCTATGGAAACTAGATGTATCACGGAGAA
TATTCTTTCTCAAACCAAGGCCAGTTTGGATTCCGTTTTTGAACTCGTTAAAGAAGCACTGAGTAAAGTCCCATTATCAGAATCGGAGGAACTGTGGCTC
ATGGCACTGAAGTTGTTTGCTGTTGAAAAGGATTATTTTCAACAGCTGGTTGAGATGTCTATTACTGCAGTAGCTAAAAGCGGGGGGAGTGATTGTGGAT
TCTCCCTCTCTTCTGCTGTAGTAAATTTCATTCTCCATAAGGATGGCGTAAAGGATGCTAGAAGGCTATATGAGAGATTTCTGGCCCTTCCACGTCCAGG
TCTTTCTTTGTATACAAAGTGCATAGAATTGGAACAGAACCTTGCCTCCGTAGGCGACAAGGAAAGTCTCGTAACTGCTCGAAAGTTGTATGAATCAGCA
CTTTCAAGCTATGATCAGAACTTGAGTTTGTGGCAAGATTACTATTCGATGGAGATTAAGTTGGGAACGTCGGAGACGGCGGATGCTGTACATTGGCGAG
CGAGGAAGACTCTGAAGAACCAAGCTGCTGCTGCAACGTTGGTAGCTTCTCCCTTGTAA
AA sequence
>Lus10003351 pacid=23148045 polypeptide=Lus10003351 locus=Lus10003351.g ID=Lus10003351.BGIv1.0 annot-version=v1.0
MADIVQYRLERMVEELDDLERRGLFTRREIAEIVKQRRKFEYRLKRPSPLKQDYLTYIDYETQLDRLRRLRKKSVSCDLDKKNNKKTKLSVSDFTGVSRI
MEIYRLAVMRYKGDVDLWIRYLEFCKERKNGRMKKVLAQLLRFHPKVPGVWIYAAAWEFDHNLNAEAARALMQSGLRVCPTSEDLWVEYLRMELTYLNKL
KARRVALGEGKGTLVREDGDAIDDKRWKDENRDVFMSLDEEAKHNTDDDDEESEGKTDLFKEQGLLILRAVYSGAVEALPSSFSLRQRLFEILEATDLAH
SEDMRQQILSDMKRDFSRDPKYWEWLARLEVSSPGSNQGIVGDAMFEKLQKAAKVYEEALEVLPSPVMFNMYTKFLMDIVAPKNENTQLSVCTQDWVSRL
LSAYEKAELVGSMSEDLACDYVSFYLHLGKFDKARQLARELCCGELSKSAKLWFLRASMETRCITENILSQTKASLDSVFELVKEALSKVPLSESEELWL
MALKLFAVEKDYFQQLVEMSITAVAKSGGSDCGFSLSSAVVNFILHKDGVKDARRLYERFLALPRPGLSLYTKCIELEQNLASVGDKESLVTARKLYESA
LSSYDQNLSLWQDYYSMEIKLGTSETADAVHWRARKTLKNQAAAATLVASPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28200 unknown protein Lus10003351
[exp]
0 1
AT2G41620 Nucleoporin interacting compon... Lus10039624
[exp]
1.4 0.9472
AT2G33340 MAC3B MOS4-associated complex 3B (.... Lus10023728
[exp]
3.2 0.9421
AT4G07410 PCN POPCORN, Transducin family pro... Lus10005385
[exp]
4.5 0.9344
AT1G18450 ATARP4 actin-related protein 4 (.1) Lus10042980
[exp]
4.5 0.9280
AT4G28200 unknown protein Lus10004616
[exp]
4.9 0.9317
AT3G12270 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN A... Lus10026158
[exp]
4.9 0.9246
AT5G09840 Putative endonuclease or glyco... Lus10020866
[exp]
5.7 0.9381
AT2G41620 Nucleoporin interacting compon... Lus10029548
[exp]
7.3 0.9316
AT2G13540 ENS, CBP80, ABH... ENSALADA, CAP-BINDING PROTEIN ... Lus10005012
[exp]
8.8 0.9324
AT5G55230 ATMAP65-1 microtubule-associated protein... Lus10043178
[exp]
9.6 0.9153

Lus10003351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.