Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 77 / 5e-17 PHD finger transcription factor, putative (.1) AT5G63900 70 / 1e-14 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G36740 60 / 4e-11 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 56 / 1e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 54 / 3e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT2G27980 40 / 0.0003 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 40 / 0.0003 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 39 / 0.0005 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012522 [exp] 198 / 5e-61 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10015266 [exp] 151 / 7e-43 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 145 / 5e-41 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10000368 [exp] 121 / 2e-33 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10042283 [exp] 100 / 6e-25 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10025385 [exp] 76 / 1e-18 ND 37 / 7e-04 Lus10007741 [exp] 54 / 5e-09 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 54 / 6e-09 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10026374 [exp] 52 / 4e-08 AT3G14980 177 / 2e-47 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 102 / 9e-26 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 85 / 1e-19 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 56 / 1e-09 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 53 / 1e-08 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 50 / 7e-08 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 50 / 1e-07 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 49 / 3e-07 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G003900 [exp] 44 / 1e-05 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 43 / 2e-05 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.001G153200 [exp] 42 / 7e-05 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003352 pacid=23148047 polypeptide=Lus10003352 locus=Lus10003352.g ID=Lus10003352.BGIv1.0 annot-version=v1.0 ATGAACGCGATTGAAAAGAAATTGACTGAACTAGGAGTTGAGAGGCTGGTTCTACCTGCTGTTCCTGCTTTGTTAAACACATGGACCGGTTCGTTCGGGT TCTCAAAGATGACAGATTCCGAGAGACTGCGGTTTGCAGACTCCTTTTTCTTGAACTTTCCAGGCGCTATCTTGTGTCACAAGCTATTAACGTGCACTAA ATCAAGTCCATTGCTGAAAGGTAGTAGATTTTTCAGCTCGAATCCCTTCGAGTATCAACAATCTCCCTGGCATATAAAAAGAGTTCTTTTTTTTACCTGG ACTGAATTGTTTGCAGAGATCCCAGCAAAAACCGATGAAAGCAATACCCGTGGAAAGGTTGAAGAAATGGAGGTGGAGCTTGATGGATCATCGAGCCTGG TATCTGAAGTGGTTCAAGCTGAGGAAACAGAACAACAACACTCGAAAATCGGGTAA
AA sequence Show only first row Show all	>Lus10003352 pacid=23148047 polypeptide=Lus10003352 locus=Lus10003352.g ID=Lus10003352.BGIv1.0 annot-version=v1.0 MNAIEKKLTELGVERLVLPAVPALLNTWTGSFGFSKMTDSERLRFADSFFLNFPGAILCHKLLTCTKSSPLLKGSRFFSSNPFEYQQSPWHIKRVLFFTW TELFAEIPAKTDESNTRGKVEEMEVELDGSSSLVSEVVQAEETEQQHSKIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	0	1
AT5G07610			F-box family protein (.1)		Lus10015048 [exp]	2.0	0.7991
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10023776 [exp]	2.6	0.8119
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	6.6	0.8083
AT1G77270			unknown protein		Lus10042760 [exp]	7.9	0.7900
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10008775 [exp]	8.0	0.7300
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	10.7	0.8013
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	13.4	0.7827
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	16.2	0.7597
AT2G26840			unknown protein		Lus10036059 [exp]	16.9	0.7724
					Lus10000458 [exp]	18.1	0.7415

Compare expression of checked genes

Lus10003352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.