Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43610 227 / 1e-63 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008428 [exp] 458 / 8e-148 AT3G43610 715 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153300 [exp] 224 / 2e-62 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10003354 pacid=23161712 polypeptide=Lus10003354 locus=Lus10003354.g ID=Lus10003354.BGIv1.0 annot-version=v1.0 ATGGCGGTGGATACCAACTTCGGATCCCTATTCGAGAAGCTGAAGGTGGAAGATCCATGGCTTCCTCCGTCTACTTGGGAATCCATACCTTCCCAAAATG CTGCCTCACGTCGCTTACGCTCCTCTCGCCCCGATTCTTCCAGCTCGCCTTCCCTCGCCTCTTCAGTGTCGGAGGCAAGTTTAGTGAAATTAGCTTTGAA TGCTTTGCAAGGAGTTGAATCTTCCCTTATAAGCATTGAGAAGCTCTCTGCTGCCTTTAACGCAGACCCTGCTGATAGAACCCACCTTGGAATTTCTAGT ATATGGAGTCGTTCTTCCAGCACTCAAGCCTTGGCAAAGATTCTCAACTCTATTGGCTGCTTTGGATGTTTGGTTTTCCTTCTCAGAAAATTTGTAGATC ATTTCACTTGTTTGAGCTCCAAAACAGCTTCACCAGGAAGGCAACATGGTATTTGTAACGTGGTTGCGGATGGAAATAACGGTTACGGTAATAGAGGAGA GGTAAACTATCCTCCTTACAGTTTAGTGAATCAAGCATTTGCTGTTGCTGTTGGGAAGGTTATAGAAGGTTACATTTGTGCTTTGGATACGGTATGTGCT TCAGTGGGTTTAAGACGTTCAACAAACAGTGTGGATCCCTTTGTTCATTCACCTGAAGTGGGGACACCTCTTACTAGTGTTGTGCATCATGAATTCACCC TACTGGAAGTTTATCTGCACACAAAGGAACTGAGAACGAAAATTGAAGCTCTTGGGAACATCTGCTACCTACAGAACATAGCTTTAAGCTTCTCTTCCTC TTCATTTGAAGAGTTAGGAGCAAAAGCAAGTGCAGAATTTGTCAATTTTCACAGTGGAGGCAATCTTCTAAGTCACTTGTATGGCCAATTACAGGTGGCA CCCGATATTTTTGCTCCTTTATTTCTTGAGGGTGGCGATGGAAATGGAAAGATTCTTGACATGGAGGACAGCACTATCAACAATCCATTACCTAAGCCGA TTGAAAGTGAACAAGCACTTCTCGCGGATAAGAAGCCACATGCCATTTTTGAGAAGACAAAGGCCGTAGACCAAATGAGTTTGTTCGAAAACGAGACACC TTTTGGCGACTTGTCCACATCCTCATATACTTGGGCAGGAAGAGGGTCGTATGTCTCTGGTACCCCACAGTTTTCAACTGAGAATCAGTGGTTGAAAAGA CTTGCAATCGTATCTGGGTACAGTGACCTTAATGACTCTTCCCCAAATTGCAAAACAAATAGGGTATTTGGAGATCTGCCCCTTTTTGCTGAAAAGACGT GCACTAAAAATGGCTTGATAAAGGAAGATTTAAGCAAGGATTTGCCTGTAAATGACAACCGTGCTTCAGACATTTCCAGTATTTCTCCTAGGGAACCACA CTGTGAGTCTGAGTTTCTCAAAGGGAGCCGAAACTCATGGACACCTAAAAGCTTTCCTCTAGTGAGCAAGCCTCTAGATGTTGGATCATTAGCTTACTTT AACTTTTCAGCTGTGATGGATCCTTGTACCTTATCCTTGGAAAAGGTAAGTGCCAGTGTAAGGCCTGATTCGCAGGCTCAATTTCTATCTTCTTCCATTG ATGCTCCTGCCAGTATACTCAGACATGAGAAAGAAAAACACAAAGGTGAAGCTGGTGTAAGTCGTCATAGTGATACTGAATTGCCTTCTGCATCCTCACC TTCAAAATGTGAAGAACATGCACGAGATGCGACATTACCAGCAGATGTTCGTGGTGCAAGTAGTTGGGAGAAGTTGCTTGGTACATCTTGTTAG
AA sequence Show only first row Show all	>Lus10003354 pacid=23161712 polypeptide=Lus10003354 locus=Lus10003354.g ID=Lus10003354.BGIv1.0 annot-version=v1.0 MAVDTNFGSLFEKLKVEDPWLPPSTWESIPSQNAASRRLRSSRPDSSSSPSLASSVSEASLVKLALNALQGVESSLISIEKLSAAFNADPADRTHLGISS IWSRSSSTQALAKILNSIGCFGCLVFLLRKFVDHFTCLSSKTASPGRQHGICNVVADGNNGYGNRGEVNYPPYSLVNQAFAVAVGKVIEGYICALDTVCA SVGLRRSTNSVDPFVHSPEVGTPLTSVVHHEFTLLEVYLHTKELRTKIEALGNICYLQNIALSFSSSSFEELGAKASAEFVNFHSGGNLLSHLYGQLQVA PDIFAPLFLEGGDGNGKILDMEDSTINNPLPKPIESEQALLADKKPHAIFEKTKAVDQMSLFENETPFGDLSTSSYTWAGRGSYVSGTPQFSTENQWLKR LAIVSGYSDLNDSSPNCKTNRVFGDLPLFAEKTCTKNGLIKEDLSKDLPVNDNRASDISSISPREPHCESEFLKGSRNSWTPKSFPLVSKPLDVGSLAYF NFSAVMDPCTLSLEKVSASVRPDSQAQFLSSSIDAPASILRHEKEKHKGEAGVSRHSDTELPSASSPSKCEEHARDATLPADVRGASSWEKLLGTSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000832 [exp]	2.0	0.9428
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	3.0	0.9475
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	6.9	0.9371
AT5G43310			COP1-interacting protein-relat...		Lus10011809 [exp]	8.5	0.9193
AT4G03090			sequence-specific DNA binding;...		Lus10006938 [exp]	9.2	0.9414
AT1G22060			unknown protein		Lus10033461 [exp]	10.1	0.9257
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	10.7	0.9414
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	11.4	0.9348
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	11.7	0.9195
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	12.2	0.9414

Compare expression of checked genes

Lus10003354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.