Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52860 131 / 6e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008425 [exp] 191 / 9e-64 AT3G52860 179 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127900 [exp] 154 / 4e-49 AT3G52860 142 / 5e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003357 pacid=23161704 polypeptide=Lus10003357 locus=Lus10003357.g ID=Lus10003357.BGIv1.0 annot-version=v1.0 ATGGCTGAGAGGCAAGCTCTGGATCAACCACAGCAGCAGCAGCAAGAGCTACAACCACCATCTCAGCAGAATCCCGAAGGAGAAGACATGGTAGCTTGTG TAATGGCGTTAGAGGCTGCTTTGCTTCCATGCTTGCCCGCCAGGGAGCTCCAAGCCATCGACCGGTGTCCCCACCCATCTCACCAGATTGATGTGGAGAG GCATGCAAGGGATTTCATGGAGGCTGCTAAGAAGCTTCAACTGTATTTCATCGGACTCCAACACAAAGACCAGCCTACCGCAGCCGGAAAGCTTAGAAAG AAGATTGCTGAAATGGAGGAAGAGTTGAAGACGAAAGGCGAGCTTATCAAGAAGCAAGAGAGACTTATCCAGGGGTGGCGAGAAGATCTCAAAGAGCAGT TGGAGAAGCATAAGATTGAACTGGAGACAGTATGA
AA sequence Show only first row Show all	>Lus10003357 pacid=23161704 polypeptide=Lus10003357 locus=Lus10003357.g ID=Lus10003357.BGIv1.0 annot-version=v1.0 MAERQALDQPQQQQQELQPPSQQNPEGEDMVACVMALEAALLPCLPARELQAIDRCPHPSHQIDVERHARDFMEAAKKLQLYFIGLQHKDQPTAAGKLRK KIAEMEEELKTKGELIKKQERLIQGWREDLKEQLEKHKIELETV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52860			unknown protein		Lus10003357 [exp]	0	1
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	5.2	0.8804
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	8.9	0.8726
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	18.7	0.8648
AT4G10970			unknown protein		Lus10032393 [exp]	20.1	0.8338
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	23.8	0.8570
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	24.4	0.8680
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	24.8	0.8535
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	24.9	0.8665
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	25.6	0.8624
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027954 [exp]	30.9	0.8575

Compare expression of checked genes

Lus10003357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.