Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47580 279 / 5e-95 U1A spliceosomal protein U1A (.1) AT2G30260 219 / 1e-71 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 212 / 5e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G29400 42 / 0.0002 AML5 MEI2-like protein 5 (.1.2) AT4G12640 40 / 0.001 RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008424 [exp] 384 / 2e-136 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10042240 [exp] 216 / 3e-70 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 213 / 2e-69 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127800 [exp] 326 / 1e-113 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G203600 [exp] 319 / 6e-111 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.019G121400 [exp] 219 / 9e-72 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 216 / 2e-70 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.006G224900 [exp] 47 / 6e-06 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.001G067300 [exp] 45 / 3e-05 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G019300 [exp] 44 / 5e-05 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G162700 [exp] 44 / 9e-05 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.012G107100 [exp] 44 / 0.0001 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.012G107900 [exp] 43 / 0.0001 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003358 pacid=23161699 polypeptide=Lus10003358 locus=Lus10003358.g ID=Lus10003358.BGIv1.0 annot-version=v1.0 ATGGCGGAAACGAATAATGCACAACCCACCGGGAATGAAGCTACTCCGAACATGACGATCTACATCAACAATCTGAACGAGAAAATCAAACTCGAAGAGC TGAAGAAGTCGCTGCATGCTGTGTTCTCGCAGTTTGGGAAGATAGTGGAAATATTGGCATTCAAGACTCTGAAGCACAAGGGCCAAGCTTGGGTTGTTTT CGAGGATGTTCAATCTGCTACGAACGCCATGAGGCAGATGCAGTCTTTCCCTTTCTATGACAAGCCCATGAGAATACAGTATGCAAAAACTAAATCTGAT GTTATAGCAAAGGCTGATGGAACCTTTGTTCCAAGAGAAAAACGAAAGAGGCATGAAGAGAAAGGAGGGAAAAAGAAGAAGGAACAACATGATCCAAATC AAATGGCAGTAGGTCTCAGTCCAGCTTATCCTGGTGGTTACGGAGCAGCACCTCCGTTATCACAAATACCGTATCCTGGTGTTAGATCTATGGTCCCTGA TGCTCCTGCTCCACCAAATAACATTCTCTTCATTCAAAACCTTCCGAACGAGACTATGCCGATGATGCTGCAAATGCTGTTCCAGCAATACCCTGGTTTT AAGGAGGTGAGAATGGTCGAAGCAAAGCCCGGGATTGCATTCATCGAGTATGGAGACGAGGGACAGTCTACTGTTGCTATGCAAGGACTGCAGAGTTTTA AGATACAGCAGAACCCCATGTTGATTACTTACGCCAAGAAATAA
AA sequence Show only first row Show all	>Lus10003358 pacid=23161699 polypeptide=Lus10003358 locus=Lus10003358.g ID=Lus10003358.BGIv1.0 annot-version=v1.0 MAETNNAQPTGNEATPNMTIYINNLNEKIKLEELKKSLHAVFSQFGKIVEILAFKTLKHKGQAWVVFEDVQSATNAMRQMQSFPFYDKPMRIQYAKTKSD VIAKADGTFVPREKRKRHEEKGGKKKKEQHDPNQMAVGLSPAYPGGYGAAPPLSQIPYPGVRSMVPDAPAPPNNILFIQNLPNETMPMMLQMLFQQYPGF KEVRMVEAKPGIAFIEYGDEGQSTVAMQGLQSFKIQQNPMLITYAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	0	1
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	1.0	0.9026
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	2.0	0.8968
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	2.4	0.8915
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	3.7	0.8560
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	3.9	0.8731
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	4.6	0.8713
AT5G02610			Ribosomal L29 family protein ...		Lus10025292 [exp]	6.0	0.8714
AT3G07590			Small nuclear ribonucleoprotei...		Lus10016068 [exp]	6.7	0.8662
AT5G09270			unknown protein		Lus10004877 [exp]	6.8	0.8358
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	7.1	0.8656

Compare expression of checked genes

Lus10003358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.