Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28380 115 / 2e-30 DRB2 dsRNA-binding protein 2 (.1) AT3G26932 112 / 2e-29 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 112 / 2e-29 DRB5 dsRNA-binding protein 5 (.1) AT3G62800 100 / 4e-25 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 69 / 2e-13 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008422 [exp] 361 / 6e-119 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10035176 [exp] 113 / 1e-29 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 113 / 1e-29 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 110 / 2e-28 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 105 / 3e-26 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10002619 [exp] 94 / 2e-22 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10023248 [exp] 68 / 3e-13 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10008862 [exp] 67 / 5e-13 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063700 [exp] 115 / 5e-30 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 114 / 2e-29 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.005G045700 [exp] 111 / 2e-28 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 110 / 3e-28 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.013G061500 [exp] 100 / 2e-24 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 99 / 3e-24 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G037900 [exp] 94 / 3e-22 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 87 / 1e-20 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 85 / 1e-19 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.017G126700 [exp] 80 / 2e-17 AT1G09700 121 / 5e-30 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10003362 pacid=23161707 polypeptide=Lus10003362 locus=Lus10003362.g ID=Lus10003362.BGIv1.0 annot-version=v1.0 ATGTATAAGGCAAAGCTGCAGGAGCTATGCCAGAAGAGGAAGTGGGAGTCTCCACAGTACTCATCCATGAGAGATGGCCCTGATCACATTCCTCGTTTCA AAGCTTCCGTGTTCATCAATGGCCTCTTCTTCCACTCTCCTCCTTCCCGCCTCTCTCTCAAAGAAGCTCAGACTGGAGCTTCCCTCGCTGCATTCAACAG CTTGAGTAAACAGGAGGTTGATTTTGCATCTCGGATTTACAAGAACCTATTGCAGGAGCTAACTGTTAAAAGAAGGCTTCCCCAGGCATGTTACAGGACT CTGATGGATGGCCCTCCTCATCTCCCAACATTCTTCTCATCTGTAGCAATAGGTTCAGAAACGTTCTCCGGGGAAGCAGGAAACTCCAAGAAAGCTGCTG AGATTAATGCTGCCAAGGTCGCTTACACCGCTCTGAAGCTCGCCTTTGATGAGTCTCCTCCTGGTTCTCCTGAAACTGAAGCAATTTTGACAGTACCAGT CCAGTCTCCTGGAGCTTCAAGGCTAGTTGAAAAAGCAGTAGCTACTGGGAATCAAACAGTGCCTGAAGAGAGTTCCTTGCATACTTGTCAGAAGAAAAGA AAGTTCAATACAGTGTGA
AA sequence Show only first row Show all	>Lus10003362 pacid=23161707 polypeptide=Lus10003362 locus=Lus10003362.g ID=Lus10003362.BGIv1.0 annot-version=v1.0 MYKAKLQELCQKRKWESPQYSSMRDGPDHIPRFKASVFINGLFFHSPPSRLSLKEAQTGASLAAFNSLSKQEVDFASRIYKNLLQELTVKRRLPQACYRT LMDGPPHLPTFFSSVAIGSETFSGEAGNSKKAAEINAAKVAYTALKLAFDESPPGSPETEAILTVPVQSPGASRLVEKAVATGNQTVPEESSLHTCQKKR KFNTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	0	1
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	5.4	0.7631
					Lus10002746 [exp]	5.5	0.8071
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	7.0	0.8144
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	7.2	0.7675
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	7.7	0.8726
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	8.7	0.7915
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	11.4	0.8690
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	21.3	0.8484
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	22.0	0.7640
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	22.6	0.7283

Compare expression of checked genes

Lus10003362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.