Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17920 1364 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) AT3G03780 1352 / 0 ATMS2 methionine synthase 2 (.1.2.3) AT5G20980 1294 / 0 ATMS3 methionine synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008422 [exp] 1547 / 0 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10020273 [exp] 1355 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002620 [exp] 1350 / 0 AT5G17920 1430 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190900 [exp] 1405 / 0 AT5G17920 1401 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.009G152800 [exp] 1387 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.019G038268 [exp] 1379 / 0 AT5G17920 1454 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.013G061800 [exp] 1374 / 0 AT5G17920 1440 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [flax] [poplar] Methionine_synt PF01717 [flax] [poplar] Meth_synt_2 Cobalamin-independent synthase, Catalytic domain CL0160 [flax] [poplar] Methionine_synt PF08267 [flax] [poplar] Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003363 pacid=23161705 polypeptide=Lus10003363 locus=Lus10003363.g ID=Lus10003363.BGIv1.0 annot-version=v1.0 ATGGCGTCTCACATTGTCGGTTATCCTCGCATGGGGCCAAAGAGAGAGCTCAAGTTTGCTTTAGAATCTTTCTGGGAGGGCAAGAGCACTGCTGAAGACT TGCAGAAGGTTGCAAAAGATCTCAGGTCATCCATCTGGAAGCAGATGTCTGATGCTGGGATCAAGTATATTCCCAGCAATAGTTTTTCATACTACGACCA GGTGTTGGACACTACAGCAATGCTTGGGGCAGTTCCTGCTAGATACGATTGGAAAGGTGGTGAGATTGGATTTGATGTATACTTCTCCATGGCCAGAGGA AACGCGTCTGTTCCTGCTATGGAAATGACAAAGTGGTTTGACACCAACTACCACTACATTGTCCCCGAGTTGGGACCAGATGTTAACTTTTCATATGCAT CACACAAAGCTGTTGAGGAGTACAAAGAGGCTAAAGCGCTTGGAGTTGATACAGTGCCAGTTCTCGTAGGTCCTGTTTCTTACTTGTTGCTTTCAAAACC TGCAAAGGGAGTCGAGAAGAGCTTTTCTCTTCTATCTCTGCTGGACAAAATCATTCCAATTTACAAGCAAGTTTTATCCGATCTAAAGGCAGCTGGTGCT TCCTGGATTCAATTTGATGAACCCAAGCTTGTGATGGATCTTGAGACTCATGAATTAGCAGCATTCACTCGGGCCTACTCAGAACTTGAAACATCTCTAT CTGGTTTGAATGCTCTGGTCGAGACATATTTTTCTGATGTTCCAGCCGAGGCATATAGAGTTCTCACATCTTTGAAGGGTGTTACTGGGTTTGGGTTTGA TCTTGTTCGTGGATCCAGGACCATTGAGCAGATTAAGGGTGGATTCCCTTCTGGTAAATATCTATTTGCCGGTGTGGTAGATGGAAGGAACATCTGGGCT AATGATCTTGCTGCTTCTCTTGAAGCTCTACAAGCTCTTCAGGGAATTGTTGGTAAAGAGAAGCTTGTTGTTTCCTCTTCCTGCTCTCTTCTACATACTG CTGTTGATCTTGTCAATGAGACCAAGTTAGATAAAGAGATAAAGTCATGGCTCGCATTTGCAGCCCAAAAAGTACTCGAAGTAAATGCCTTGGCCAAGGA TCTTACTGGACATAGGGATGAGGCTTTCTTCTCCGCTAACGCTACTGCTCTTGCTTCACGAAAATCCTCTCCAAGGGTAACCAACGAGGCTGTCCAGAAC GCTGCTGCTGCGCTAAAGAGTTCTGATCGCCGCCGACCCACTACTGTGAGTGCTAGGCTTGATGCTCAGCAGAAGAAGTTAAACCTTCCAAGTCTTCCAA CAACCACAATCGGATCTTTCCCACAGACCATGGAGCTTAGGAAGGCCCGCCGTGAATACAAGGCTAAGAAGATTTCCGAGGAGGAATATGTTAACTCCAT GAAAGAGGAAATTAACAAAGTTGTCAAGATCCAAGAAGAACTTGACATTGATGTTTTGGTGCATGGTGAACCAGAGAGAAATGACATGGTTGAATACTTC GGCGAGCAATTGTCCGGCTTTGCGTTCACAGCTAATGGATGGGTCCAGTCCTATGGTTCTCGTTGTGTCAAGCCTCCGATCATTTACGGTGATGTCAGCC GTCCTAAGGCCATGACCGTCTTCTGGTCAAGTACTGCCCAAAGTATGACAAAGCGACCCATGAAAGGAATGCTTACTGGTCCAGTCACCATTTTGAACTG GTCCTTTGTCAGAAATGACCAGCCCAGGCACGAGACCTGTTACCAAATTGCACTTGCTATCAAGGATGAAGTGGAGGATCTCGAGAGGGCTGGGATAACC GTCATCCAGATTGATGAGGCAGCTTTGAGAGAGGGGCTGCCTCTAAGGAAGACTGAGCATGCTTTCTATTTGGATTGGGCTGTACACTCCTTCAGGATCA CCAACTCTACTGTCCAAGATACAACCCAGATCCATACCCACATGTGCTACTCGAACTTCAATGACATCATCCATTCTATCATCAATATGGATGCTGATGT GATCACAATTGAGAACTCCAGATCAGATGAGAAGCTTCTCTCAGTTTTCCGTGAAGGAGTGAAGTACGGTGCAGGCATTGGACCTGGTGTGTACGACATT CACTCCCCTAGGATCCCCTCCACCGAAGAAATCGCAGACCGTGTCAGGAAGATGCTTGCTGTCCTTGAAAGCCACGTCCTCTGGGTTAACCCTGATTGTG GTCTCAAGACCCGCAAATATGATGAAGTTAAACCTGCCCTTAGCCACATGGTCGCTGCAGCCAAGCAACTCAGAGCCGAGCTTGCTAAAGCTAAGTGA
AA sequence Show only first row Show all	>Lus10003363 pacid=23161705 polypeptide=Lus10003363 locus=Lus10003363.g ID=Lus10003363.BGIv1.0 annot-version=v1.0 MASHIVGYPRMGPKRELKFALESFWEGKSTAEDLQKVAKDLRSSIWKQMSDAGIKYIPSNSFSYYDQVLDTTAMLGAVPARYDWKGGEIGFDVYFSMARG NASVPAMEMTKWFDTNYHYIVPELGPDVNFSYASHKAVEEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKSFSLLSLLDKIIPIYKQVLSDLKAAGA SWIQFDEPKLVMDLETHELAAFTRAYSELETSLSGLNALVETYFSDVPAEAYRVLTSLKGVTGFGFDLVRGSRTIEQIKGGFPSGKYLFAGVVDGRNIWA NDLAASLEALQALQGIVGKEKLVVSSSCSLLHTAVDLVNETKLDKEIKSWLAFAAQKVLEVNALAKDLTGHRDEAFFSANATALASRKSSPRVTNEAVQN AAAALKSSDRRRPTTVSARLDAQQKKLNLPSLPTTTIGSFPQTMELRKARREYKAKKISEEEYVNSMKEEINKVVKIQEELDIDVLVHGEPERNDMVEYF GEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLERAGIT VIQIDEAALREGLPLRKTEHAFYLDWAVHSFRITNSTVQDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI HSPRIPSTEEIADRVRKMLAVLESHVLWVNPDCGLKTRKYDEVKPALSHMVAAAKQLRAELAKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	1.0	0.9930
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	1.7	0.9844
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	2.0	0.9859
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	2.8	0.9811
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	2.8	0.9839
					Lus10011724 [exp]	5.3	0.9828
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	5.5	0.9835
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	6.4	0.9583
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	6.6	0.9680
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	7.9	0.9799

Compare expression of checked genes

Lus10003363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.