Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 110 / 6e-27 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT2G45850 106 / 2e-25 AT-hook AT hook motif DNA-binding family protein (.1.2) AT2G33620 103 / 2e-24 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G25320 99 / 8e-23 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 98 / 9e-23 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 97 / 5e-22 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 95 / 3e-21 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 91 / 3e-20 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 91 / 5e-20 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 91 / 9e-20 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002841 [exp] 455 / 1e-159 AT4G12080 158 / 9e-45 AT-hook motif nuclear-localized protein 1 (.1) Lus10015027 [exp] 107 / 8e-26 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 106 / 2e-25 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 104 / 6e-25 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 104 / 8e-25 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10037858 [exp] 100 / 1e-23 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030269 [exp] 100 / 3e-23 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 100 / 3e-23 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10011067 [exp] 99 / 6e-23 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070000 [exp] 120 / 1e-30 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 118 / 5e-30 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.004G189200 [exp] 112 / 6e-28 AT2G45850 147 / 4e-41 AT hook motif DNA-binding family protein (.1.2) Potri.001G115800 [exp] 109 / 6e-27 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 108 / 2e-26 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.003G116500 [exp] 108 / 2e-26 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.003G090900 [exp] 105 / 6e-25 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 103 / 1e-24 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.009G150000 [exp] 102 / 4e-24 AT2G45850 157 / 7e-45 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 102 / 5e-24 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10003371 pacid=23175207 polypeptide=Lus10003371 locus=Lus10003371.g ID=Lus10003371.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGGAAAGCACCGTCTCCGGCTCACTCGCCGGCAACTCCGACACCGACTCACCTCCTCCAATCAGCAGCCTCCACGTAGCACACCCACCTC ACCACCACCACCAACAGCAACTACCCATGTCGTCAGTAACTCCCTCTCCAGCAAACGACGTCGTTTCACCACCCAACGATTTTCTCACCAAGAAGAAACG AGGGAGGCCCAGAAAGTATGACTCGGACGGGAACCTCCGTGTCAAACCAGCGTCGTTTCATCATCATCATCATCCCAATAACAACAACAACAACTCAGCC GCTCCCCCACCGGGTTTCTATATATCGCAGTACGCCACGTCAGCGGGTGACTACGGGCATGACCAGCAGCAGCGACGGACGGCGTTAGCCTCGGCGAGAC GTGGACGCGGGAGGTCTGGTGGCTCCGGCAGCAGCTGGCAGGTGCTCGCTTCTTTAGGAGAGTTGTTTGCGAACACCGCAGGAGGCGACTTTACTCCTCA CGTGCTCACCGTAAACACCGGAGAGGATGTGGCAGGTAAAATTATGTCAGTATCTCAGAAGGGCTCTAGAGGGATTTGTGTTCTCTCAGCCAACGGCGCC GTTTCTAACGGGAGGTATGAAATACTGTCACTGACGGGATCATACACGGCAGCTGATAATCAAAATAATGGAGGTTCTACTAGGAACAGAACAGGTGGAC TTAGTGTCTCCTTAGCTAGTTCCGACGGCCGTGTAATTGGCGGCGGGGTTGCCGGACTTCTCTTGGCTGCCAGTCCTACCCAGGTGGTAGTAGGAAGCTT CAAGCCCAATGGGTATAAGGTCCATAAGCGCAAGTACAATCGCGAGCAACATTCACCGGCAATGTCTCAACCGGCCAATGTTGCCGTTCCCGCCACGGCG GCCCAAGTTGGTTTTACGATACAGCCCTTAGTATCTCCTCCTCCAACAACTACTATGACTGGTTCGTCATTGCCAGGGCAGAGTAGTCATTCCAACGCGG CAGGGGCAGAGCAGCAGGCACATAACAGTAAAGTTGATGATGGAAGACAAACGACGACGTTTCACCATCCTATGAATAATAATAGCCACGACCACCACGG AGGTTGGAATGGAACGGTGAATTCGTCGTCGTCGTCAATCCACAGGCCTTCTCCTGTCATCAACGTCTCAGCTCCTAGTGACGATGATGTTCCTGCTGGT AATTAA
AA sequence Show only first row Show all	>Lus10003371 pacid=23175207 polypeptide=Lus10003371 locus=Lus10003371.g ID=Lus10003371.BGIv1.0 annot-version=v1.0 MEEKESTVSGSLAGNSDTDSPPPISSLHVAHPPHHHHQQQLPMSSVTPSPANDVVSPPNDFLTKKKRGRPRKYDSDGNLRVKPASFHHHHHPNNNNNNSA APPPGFYISQYATSAGDYGHDQQQRRTALASARRGRGRSGGSGSSWQVLASLGELFANTAGGDFTPHVLTVNTGEDVAGKIMSVSQKGSRGICVLSANGA VSNGRYEILSLTGSYTAADNQNNGGSTRNRTGGLSVSLASSDGRVIGGGVAGLLLAASPTQVVVGSFKPNGYKVHKRKYNREQHSPAMSQPANVAVPATA AQVGFTIQPLVSPPPTTTMTGSSLPGQSSHSNAAGAEQQAHNSKVDDGRQTTTFHHPMNNNSHDHHGGWNGTVNSSSSSIHRPSPVINVSAPSDDDVPAG N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	2.0	0.9654
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	2.8	0.9599
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	3.2	0.9615
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	4.1	0.9525
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	4.8	0.9683
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	6.5	0.9615
AT1G76600			unknown protein		Lus10033761 [exp]	9.0	0.9625
AT1G02820			Late embryogenesis abundant 3 ...		Lus10008169 [exp]	10.0	0.9381
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	14.5	0.9471
					Lus10018421 [exp]	15.7	0.9607

Compare expression of checked genes

Lus10003371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.