Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10020 132 / 4e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002842 [exp] 239 / 4e-82 AT3G10020 143 / 1e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014300 [exp] 146 / 2e-45 AT3G10020 100 / 2e-27 unknown protein Potri.015G106700 [exp] 37 / 0.0003 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003372 pacid=23175213 polypeptide=Lus10003372 locus=Lus10003372.g ID=Lus10003372.BGIv1.0 annot-version=v1.0 ATGAAGCCGATCAACGACAAGGAAGAGAAAGTGGTGATAAGGGCGGTGAGCCACGACGAGGAAGGAAGGAAGAGGGTGGACAAAACCGAGCTCCACACTC ACAACATCGACACGATCAAGCACGTGGAGAAGAAGCTGATGGACAAGGGGGTCCACCGCATGGACCGCCACCCGGTCGACGGGGTCGGGATACGGAAGCC GGCTTCGAAATTCGGCCACGGCGGGAAGTACACGTGGGAGGGGCCCGGCGGGGTGGCGGAGAACGAGCTCGAGCCGGTTCCCGCGGCGATGGATGAGAGG GACCCGAACTATGTGGATGAGGAAGAGGAAGGGAGGATCTTGAGAGGGGAGAAGAGTGACGTGGCGGGTATGGTTGTGGGAGAAGTGGAGGTTGCTAAAG TGGCGGCGGAGGAGCGGGATGGTGTCGGTCGAGTCGACGTTGATCCTAGGTTGGTTTAG
AA sequence Show only first row Show all	>Lus10003372 pacid=23175213 polypeptide=Lus10003372 locus=Lus10003372.g ID=Lus10003372.BGIv1.0 annot-version=v1.0 MKPINDKEEKVVIRAVSHDEEGRKRVDKTELHTHNIDTIKHVEKKLMDKGVHRMDRHPVDGVGIRKPASKFGHGGKYTWEGPGGVAENELEPVPAAMDER DPNYVDEEEEGRILRGEKSDVAGMVVGEVEVAKVAAEERDGVGRVDVDPRLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10020			unknown protein		Lus10003372 [exp]	0	1
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	1.0	0.9889
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	3.5	0.9648
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	4.2	0.9703
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	4.2	0.9673
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	4.9	0.9626
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	5.1	0.9548
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	5.5	0.9628
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	6.9	0.9602
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026671 [exp]	7.5	0.9192
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	7.7	0.9589

Compare expression of checked genes

Lus10003372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.