Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52960 291 / 2e-100 Thioredoxin superfamily protein (.1) AT1G65980 194 / 4e-63 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G60740 189 / 2e-61 Thioredoxin superfamily protein (.1) AT1G65970 189 / 4e-61 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G65990 144 / 5e-40 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G06050 109 / 1e-29 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1) AT1G48130 41 / 0.0003 ATPER1 1-cysteine peroxiredoxin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002843 [exp] 425 / 2e-153 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10023662 [exp] 181 / 9e-58 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023180 [exp] 177 / 2e-56 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10015077 [exp] 176 / 9e-56 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10021932 [exp] 108 / 2e-28 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 87 / 8e-20 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1) Lus10018342 [exp] 42 / 0.0002 AT1G48130 338 / 2e-119 1-cysteine peroxiredoxin 1 (.1) Lus10017112 [exp] 41 / 0.0004 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102100 [exp] 326 / 2e-114 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.018G083500 [exp] 188 / 6e-61 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2) Potri.001G423500 [exp] 188 / 6e-61 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.019G024000 [exp] 100 / 9e-26 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin
Representative CDS sequence Show only first row Show all	>Lus10003373 pacid=23175204 polypeptide=Lus10003373 locus=Lus10003373.g ID=Lus10003373.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTCTCTCAGTCTCCAGAATCTTCCTCGCCTCACCCACTGCCGTCGCCGCCACCACCAAATCTCTCCTCCCTTCTGTCACCATCTCCGCCA ACCTCTCTCCTCTCACCTCCCCCAAACTCAATCTCCGATTCAACCGCACCAACCTAGCCAAACGATTCTCCGCCAAATCAGTTCCCTCAATCTCCGCCTC GATCTCCGTCGGCGATAAGCTCCCCGAAGCCACGCTCTCCTACCTGGACGCCGACAACGAGGTCCAGACCGTGACCGTCTCCTCCCTCACAGCCGGCAAG AAGGCCATCCTCTTCGCCGTCCCCGGGGCGTTCACCCCGACCTGCTCGCAGAAGCACCTCCCAGGGTTTGTGGAGAAGGCTTCGGAGCTGAAATCGAAAG GAGTGGACACGATCGCCTGCGTGTCGGTGAACGATGTGTTCGTCATGAAGGCGTGGAAGGAGAATTTGGGGATTACGGATGAGGGTGATGTTTTGCTGCT CTCCGATGGGAATTTGGAGTTCACTAAGGCGATTGGTTGCGAGCTGGATCTGAGCGATAAGCCGGTGGGGCTTGGGGTTAGGTCTAGGAGGTATGCGTTG CTGGCGGAGGACGGCGTCGTTAAGGTGCTGAATTTGGAGGAAGGCGGCGCGTTTACCTCCAGCGGAGCTGAGGATATGCTCAAGGCACTGTGA
AA sequence Show only first row Show all	>Lus10003373 pacid=23175204 polypeptide=Lus10003373 locus=Lus10003373.g ID=Lus10003373.BGIv1.0 annot-version=v1.0 MASSLSVSRIFLASPTAVAATTKSLLPSVTISANLSPLTSPKLNLRFNRTNLAKRFSAKSVPSISASISVGDKLPEATLSYLDADNEVQTVTVSSLTAGK KAILFAVPGAFTPTCSQKHLPGFVEKASELKSKGVDTIACVSVNDVFVMKAWKENLGITDEGDVLLLSDGNLEFTKAIGCELDLSDKPVGLGVRSRRYAL LAEDGVVKVLNLEEGGAFTSSGAEDMLKAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52960			Thioredoxin superfamily protei...		Lus10003373 [exp]	0	1
AT3G52960			Thioredoxin superfamily protei...		Lus10002843 [exp]	1.0	0.9678
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	1.4	0.9339
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	7.7	0.8923
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039008 [exp]	8.8	0.8964
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	10.2	0.9108
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	10.6	0.9010
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	11.0	0.8951
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	11.5	0.8970
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	11.6	0.8991
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10002353 [exp]	13.4	0.8548

Compare expression of checked genes

Lus10003373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.