Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44750 110 / 4e-29 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G22650 101 / 5e-25 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) AT5G03740 100 / 7e-25 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) AT2G27840 74 / 1e-15 HDT04, HDA13, HDT4 HISTONE DEACETYLASE 13, histone deacetylase-related / HD-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002846 [exp] 232 / 2e-74 AT3G44750 105 / 4e-26 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10020542 [exp] 130 / 3e-38 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10009390 [exp] 119 / 6e-32 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10009391 [exp] 119 / 3e-31 AT2G27830 130 / 7e-36 unknown protein Lus10020543 [exp] 115 / 1e-30 AT5G22650 136 / 1e-38 ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116500 [exp] 142 / 2e-40 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Potri.004G188800 [exp] 126 / 1e-34 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.009G149400 [exp] 122 / 3e-33 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003376 pacid=23175226 polypeptide=Lus10003376 locus=Lus10003376.g ID=Lus10003376.BGIv1.0 annot-version=v1.0 ATGAAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAGACTCTCGAAGTTCAGTGTGCTGATAACTTCATTTTGCACCTTTCGCAGGCTGCTCTTGGTGAGT GTAAGAAGGACAAAGGAAACGGATCTATTTGCTTGTATGTGACAATTGGTGGCAAGAAGCTTGTTCTTGGAACTCTTTCCTCCGAGAACGTTCCTCAGCT GTCATTTGACCTGGTGTTTGAACGAGATTTCCAGTTGTCTCATAGTGGCAAAAATGGAAGCGTTCACTTCATTGGCTACAAAAACCTGATTCAGACGGAG AGGATCTCCCCGCTGCTGCTCTTAATGGTAATTATTGCTCTACCAATCGGCAAAATGGTCATGCAATTTTGTGTTTCTGTGTACGTTACATTCTGTTGTT TTTTAGCAGGTGCACCTGTCTCTCATAGTAGTGAGATTAAGCCTGCGAAAGAAAAGGAGAAACCCAGTTCAAGTGGAACTAAGAAGGTGAAAATTGTGGA ACCGAATAAGGATGACACAACAACTGATGAAGAAACTGATGATTCAAGCGATGATGATGATGACCTATCAGATGATGATCATCCAGCTGACAAAGTTAAG TTGATCAAAGCTGAGAGTACAAGTGATGACGAAGATGAAGATGACAGCGATGATTCGGAAGACACTGACGAGGAAGAAGAGGATGTTACGGAGAAAAATG TGAAGAAGGGTAGTACTATCAAGAAGAGACCTGGTCCTGAGACATCGACCCCTGTTCCCAACAAGAAGGCCAAGATGGTTACCCCTCAGAAAACTGGTAT CCCTCCTTTTTGGTGCCTGGCTCTTTGA
AA sequence Show only first row Show all	>Lus10003376 pacid=23175226 polypeptide=Lus10003376 locus=Lus10003376.g ID=Lus10003376.BGIv1.0 annot-version=v1.0 MKFWGVEVKSGETLEVQCADNFILHLSQAALGECKKDKGNGSICLYVTIGGKKLVLGTLSSENVPQLSFDLVFERDFQLSHSGKNGSVHFIGYKNLIQTE RISPLLLLMVIIALPIGKMVMQFCVSVYVTFCCFLAGAPVSHSSEIKPAKEKEKPSSSGTKKVKIVEPNKDDTTTDEETDDSSDDDDDLSDDDHPADKVK LIKAESTSDDEDEDDSDDSEDTDEEEEDVTEKNVKKGSTIKKRPGPETSTPVPNKKAKMVTPQKTGIPPFWCLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	0	1
AT1G32730			unknown protein		Lus10001085 [exp]	6.7	0.8279
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	6.9	0.8613
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	7.1	0.8640
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	7.5	0.8433
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	8.4	0.8619
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	9.9	0.8428
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	11.8	0.8498
AT1G05205			unknown protein		Lus10027173 [exp]	12.5	0.8475
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	17.7	0.8062
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	18.1	0.8009

Compare expression of checked genes

Lus10003376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.