Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52940 531 / 0 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT1G50430 131 / 4e-34 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033356 [exp] 132 / 2e-34 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10035723 [exp] 127 / 2e-32 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034811 [exp] 102 / 2e-23 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116200 [exp] 539 / 0 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.008G005200 [exp] 135 / 1e-35 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253200 [exp] 130 / 7e-34 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF01222 [flax] [poplar] ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence Show only first row Show all	>Lus10003377 pacid=23175223 polypeptide=Lus10003377 locus=Lus10003377.g ID=Lus10003377.BGIv1.0 annot-version=v1.0 ATGGAATTGGATCCGAGTCTACTGCTTCCTTCGTGGAGCTCTGTGGCCGTATTGGCTGTGTATTTCGGGTACTTGGCAATTGCTGGATCTATACTGCCTG GGAAAGTAGTTCCTGGTGTGGCCTTACAGGATGGCTCCCGTTTGTATTATCGCTGCAATGGTTTGTTATCCTTGTTGTTGCTGGTTGGGCTTCTTGGAGT TGGAGCTAAGATGGAGATCGTTTCAGCTACGGTGATAGCAGAGAGAGGACTCGAGCTTTTGTCAGCGACATTCATATTCAGTGTTGTGGCGACATTGATT CTCTATGTAGCTGGTTGCCAGTCCAAGAATCTGGGTTCTTCCCTTAAAGCTCATGTTTCTGGGGACTTAGTACATGACTGGTGGTTTGGGATACAGCTTA ATCCTCAGTTCTTGGGTATCGATCTCAAGTATGCTCGCTTGTACTATGCTGGAACTAACTCAAAGCTTGGGTTCCGCAGATTCTTCTTCGTCAGAGCTGG AATGATGGGATGGCTATTCATAAACCTGTCAGTTTTAACAAAGAGTATCCAAGATGGTACCTTGAACCATTCTATGATCCTTTACCAAGTGTTTTGTACG TTATACATTCTGGACTACTTTATCCATGAAGAATACATGACCTCTACATGGGACATAATCGCTGAGAGATTGGGTTTTATGCTGGTGTTCGGGGATCTCG TCTGGATTCCTTTTACTTTTAGCATCCAGGGGTGGTGGCTGCTAAGGAATAAGGTGGAGCTAAACCCAGCTGCTGCAGTTGCTAATTGCTTTGTATTCCT GATCGGATACATGGTGTTTAGAGGCGCTAACAAGCAGAAACATGACTTCAAAAGGGACCCCAAAGCACCAATTTGGGGGAAACCGCCTAGAGTTATTGGT GGAAAGCTACTTGCTTCTGGATATTGGGGAATTGCAAGGCACTGCAATTACCTTGGAGACTTGATGTTGGCTCTATCATTCAGCCTCCCTTGTGGAATCA GCTCTCCTGTACCGTACTTCTACCCGATCTACCTTCTGATCCTTCTCCTCTGGAGAGAGCGAAGGGACGAAGCACGCTGTGCGGAGAAGTACAGAGAAGT ATGGGCAGAATACTGTCGACTAGTACCATGGAGGATATTGCCTTACTTGTACTAG
AA sequence Show only first row Show all	>Lus10003377 pacid=23175223 polypeptide=Lus10003377 locus=Lus10003377.g ID=Lus10003377.BGIv1.0 annot-version=v1.0 MELDPSLLLPSWSSVAVLAVYFGYLAIAGSILPGKVVPGVALQDGSRLYYRCNGLLSLLLLVGLLGVGAKMEIVSATVIAERGLELLSATFIFSVVATLI LYVAGCQSKNLGSSLKAHVSGDLVHDWWFGIQLNPQFLGIDLKYARLYYAGTNSKLGFRRFFFVRAGMMGWLFINLSVLTKSIQDGTLNHSMILYQVFCT LYILDYFIHEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQGWWLLRNKVELNPAAAVANCFVFLIGYMVFRGANKQKHDFKRDPKAPIWGKPPRVIG GKLLASGYWGIARHCNYLGDLMLALSFSLPCGISSPVPYFYPIYLLILLLWRERRDEARCAEKYREVWAEYCRLVPWRILPYLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	0	1
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	3.3	0.9619
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	3.9	0.9530
AT5G08680			ATP synthase alpha/beta family...		Lus10034632 [exp]	4.0	0.9575
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	4.0	0.9431
AT2G22660			Protein of unknown function (d...		Lus10019239 [exp]	5.1	0.9266
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	6.0	0.9344
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10041768 [exp]	9.2	0.9375
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	9.8	0.9124
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	9.9	0.9307
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	12.4	0.9218

Compare expression of checked genes

Lus10003377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.