Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 649 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002849 [exp] 857 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 664 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10037223 [exp] 425 / 3e-138 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 426 / 2e-136 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 246 / 5e-77 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119300 [exp] 775 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.006G102000 [exp] 773 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.010G034800 [exp] 397 / 4e-127 AT2G38280 974 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10003378 pacid=23175198 polypeptide=Lus10003378 locus=Lus10003378.g ID=Lus10003378.BGIv1.0 annot-version=v1.0 ATGGATGCTTACACGGTTCATCTCGCCATGGCGGCTCTAGTCGGAGCCTCCTTCGTCGCCGTATCCGCTTACTATATGCACCGCAAAACCCTAGCGCAGC TGCTCGAGTTCGCCAAGGCCGTCGAGAGAGAACGAGAGAAGGCTGATGGCGTAGAGGAGGAGGACGGCGGTGGGGACAATAACTACTCCGGCGGCGGCGT CGACTCGCCGCGGCATTTGTTGAGGAAGCGCCGGAGCCGAGGGAGGGTGAAGGCCAATGGTTACAACCGCCGTGGCTCCGCTTCGCTTTCGGACGTGACC GCCCTTTCTTCCGGACGTAAATCAACTGGACATACTAAGAGGACTGGAAGTTTCATTAGACCAACTTCCCCAAAGTCTCCCGCTGTTAGTGCATTCGAGA GTGTAGAAGGATCGGACGAAGAAGATAATCTGACTGAAGATATCAAGCTAGACCCCACTTATACGCTTGCTAATGGAAATGCTGAGAATTTATCAGCTCA AATTAACAACAACGGGGAGCAAATTCCAATCCCTGCTGCCAGCATGATCCGTTCCCATAGTATGTCCGGTGACCTTCATGGTGTCCAACCTGATCCAGTT GCAGCTGACATTTTGAGGAAAGAGCCTGAGCAAGAAACTTTTGCACGACTTAGAATTAGTCCTACTGAGGTACCATCACCCGATGAAGTGGAGGCTTATC TGGTTCTGCAAGAATGTCTTGAATTGAGGAAAAGATATTTATTCAAGGAAGCAATTGCTCCATGGGAAAAAGAAGTTATTTCTGACCCTAGCACACCAAA ACCTAATCTTCAGCCCTTCTTCTATACCATGGAAGAGAAGTCTGATCACTATTTTGAAATGCAAGATGGTGTCATTCATGTCTACCCACATAAAGATTCC AAGGAGGAGCTCTTTCCTGTTGCTGATGCAACAACTTTTTTTACTGATTTGCATCACATACTCAGAGTTACTGCTGCTGGAAATATCAGGACATTATGTC ATCATCGGCTTAATCTTCTGGAACAAAAATTCAACCTCCATTTGATGCTTAATGCCGATAGGGAGTTTCTTGCCCAGAAAAGTGCCCCTCATCGTGATTT CTACAATGTCAGGAAAGTTGACACACACGTTCATCATTCTGCTTGTATGAACCAGAAGCACCTTCTAAGGTTTATAAAATCAAAGTTGAGGAAGGAGCCT GATGAGGTTGTGATATTTAGAGATGGGACTTACCTAACATTGAAAGAAGTTTTTGAGAGTCTGGATTTAACAGGGTATGACCTCAATGTTGATCTTTTGG ATGTCCATGCCGACAAAAGCACTTTTCATCGGTTTGACAAGTTCAACCTTAAGTATAATCCTTGCGGTCAAAGTAGACTCAGGGAGATTTTCCTTAAGCA GGATAACCTCATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTAGAAGCTAGAGACATCGACCACCTTGCTGCAACTTTTCTT ACCGCTCAGAATATTGCCCACGGAATCAACTTAAGGAAATCCCCCGTGCTTCAGTATTTATATTACCTGTCACAGATTGGATTAGCCATGTCTCCTCTCA GCAATAACTCTTTGTTTCTCGACTACCATCGGAACCCTCTTCCGATGTTCTTCCTTCGAGGTCTCAATGTCTCGCTCTCCACCGATGATCCTCTTCAAAT CCATCTGACGAAAGAACCCTTGGTTGAAGAGTACAGCATTGCTGCTTCTGTGTGGAAACTGAGTTCTTGTGACCTCTGTGAGATCGCCCGGAACTCAGTC TACCAGTCTGGCTTCTCTCATGCTTTGAAGTCACACTGGATAGGGAAGCAGTACTACAAAAGAGGACCAGACGGTAACGACATTCACAAAACCAACGTCC CTCATATACGACTGGAATTCCGCGAAACGATCTGGAGAGACGAGATGCAACAAGTTTACCTCGGCAAGGCCATGATATCTGATGATGTCGATAGATAA
AA sequence Show only first row Show all	>Lus10003378 pacid=23175198 polypeptide=Lus10003378 locus=Lus10003378.g ID=Lus10003378.BGIv1.0 annot-version=v1.0 MDAYTVHLAMAALVGASFVAVSAYYMHRKTLAQLLEFAKAVEREREKADGVEEEDGGGDNNYSGGGVDSPRHLLRKRRSRGRVKANGYNRRGSASLSDVT ALSSGRKSTGHTKRTGSFIRPTSPKSPAVSAFESVEGSDEEDNLTEDIKLDPTYTLANGNAENLSAQINNNGEQIPIPAASMIRSHSMSGDLHGVQPDPV AADILRKEPEQETFARLRISPTEVPSPDEVEAYLVLQECLELRKRYLFKEAIAPWEKEVISDPSTPKPNLQPFFYTMEEKSDHYFEMQDGVIHVYPHKDS KEELFPVADATTFFTDLHHILRVTAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEP DEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVFSDLEARDIDHLAATFL TAQNIAHGINLRKSPVLQYLYYLSQIGLAMSPLSNNSLFLDYHRNPLPMFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSV YQSGFSHALKSHWIGKQYYKRGPDGNDIHKTNVPHIRLEFRETIWRDEMQQVYLGKAMISDDVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	0	1
					Lus10032559 [exp]	1.0	0.9065
AT2G40390			unknown protein		Lus10010225 [exp]	3.9	0.7960
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10019164 [exp]	4.5	0.8212
AT3G01960			unknown protein		Lus10012546 [exp]	5.3	0.7984
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	9.8	0.7924
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	9.9	0.7846
AT2G16190			unknown protein		Lus10040480 [exp]	10.7	0.7002
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	12.2	0.7998
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	13.3	0.7764
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	20.8	0.7605

Compare expression of checked genes

Lus10003378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.