Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 555 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT3G51820 515 / 6e-178 PDE325, ATG4, G4, CHLG PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) AT2G44180 104 / 2e-23 MAP2A methionine aminopeptidase 2A (.1) AT3G59990 101 / 1e-22 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G18950 57 / 3e-08 ATHPT, VTE2, TPT1, HPT1 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) AT3G11945 52 / 1e-06 PDS2, ATHST PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) AT4G37040 49 / 6e-06 MAP1D methionine aminopeptidase 1D (.1) AT2G45240 44 / 0.0005 MAP1A methionine aminopeptidase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002851 [exp] 681 / 0 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002850 [exp] 677 / 0 AT3G51820 518 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10005046 [exp] 622 / 0 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 620 / 0 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027815 [exp] 540 / 0 AT3G51820 604 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10023798 [exp] 290 / 1e-84 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000126 [exp] 241 / 1e-74 AT3G51820 253 / 1e-83 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Lus10000403 [exp] 88 / 5e-18 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 64 / 1e-10 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102200 [exp] 617 / 0 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 607 / 0 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.006G102100 [exp] 553 / 0 AT3G51820 547 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.016G119400 [exp] 550 / 0 AT3G51820 541 / 0.0 PIGMENT DEFECTIVE 325, UbiA prenyltransferase family protein (.1) Potri.004G084800 [exp] 102 / 9e-23 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 97 / 7e-21 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.018G090700 [exp] 51 / 3e-06 AT2G18950 529 / 0.0 VITAMIN E 2, homogentisate phytyltransferase 1 (.1) Potri.005G137400 [exp] 49 / 1e-05 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.006G197600 [exp] 49 / 1e-05 AT3G11945 560 / 0.0 PHYTOENE DESATURATION 2, homogentisate prenyltransferase (.1.2) Potri.014G067300 [exp] 43 / 0.0007 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF01040 [flax] [poplar] UbiA UbiA prenyltransferase family CL0613 [flax] [poplar] PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10003379 pacid=23175205 polypeptide=Lus10003379 locus=Lus10003379.g ID=Lus10003379.BGIv1.0 annot-version=v1.0 ATGACGTCCCTGCTCAATCCAGCTCTATCCATCGGGTTGTTCAACGGTCGCTGTAGACGACTTCGTTCTCAGCTTTCCGTCTCCATCTCAAATCGTCAGC TTACCGTTAGAGCAGCTGAGAGTGATACAAACGAAGGTTTCCAGCTCTACTCTCTTCTCATTTCTTCTCTTCCTCACTCTTTAACGTTTCGTCTCGCGAT AGAAAAACCTCCGGCATCGGATAAAACGCGGGGCAACAGTGGTGGTTCTAGCTTCAATCAACTTCTTGGCATCAGAGGAGCTTCTCAGGAAACTAACAAA TGGAAAATCCGTCTTCAATTAACGAAACCAGTGACCTGGCCTCCGTTAGTGTGTGGAGTTGTTTGTGGAGCAGCTGCTTCTGGAAACTTCCACTGGACAA TGGAGGATGTCACCAAATCCGTTGTGTGCATGATGATGTCTGGCCCGTTTTTAACTGGTTACACACAGACGATGAACGACTATTATGATCGTGACATTGA TGCAATCAACGAACCTTATCGTCCCATTCCCTCTGGAGCCATCTCTGAGAATGAGGTTCTTTCTCAAATATGGCTGCTGCTTCTTGGAGGCCTCGGCTTG GCTGGTATATTGGATGTTTGGGCAGGACATGAATTTCCTATAGTTTTGTACCTTGCTTTGGGAGGCTCCTTGGTGGCATATGTATATTCCGCTCCACCTC TGAAGCTTAAGCAGAATGGTTGGATTGGGAATTTGGCTATGGGAATTAGCTATATCAGTTTGCCCTGGTGGGCAGGTCAAGCTCTATTTGGGACCCTTAC ACCTGACATAATCGTTCTGACACTCCTGTACAGCATAGCCGGGCTGGGCGTTGCGGTTGTAAATGACTTCAAAAGCATTGAAGGAGACAGAGCAATGGGT CTCCGGTCAATACCAGTGGCATTCGGTGCTGAAACGGCTAAATGGATCTGTGTTGGTACAATCAACGTCACTCAAATATCTATAGCTGGTTATCTCCTTG GAGCTGGGAAACCTTACCACGCCCTGGCCCTACTAGCTCTTATAGTTCCACAAGCCTTTTTCCAGTTTGAATATTTCCTTAAAGATCCTGTCAAGTACGA CGTCAAATATCAGCGACTGAAAGAGCTTGTGCGTGAATCCGGTGAAATCATGTCCGACGAAGAGAGGGAGGAGGAGAAGGAGTTGGATCTCTCTTCTCCT GAAGTCGTCACCAAGTACAAGAGCGCTGCCGAGATCCTCAACAAGGCCTTGCAGTCTGTGGTGAAAGAATGTAAACCGAAGGCAAAGGTCGTTGACCTAT GTGAGAAAGGGGATTCATTCATACGGGAGCAAACTGGTAACATGTACAAGAATGTTAAGAAGAAGATTGAAAGGGGAGTGGCATTTCCTACGTGTGTTTC TGTAAACAATGTTGTTTGCCACTTCTCTCCACTTGCCAGTGACGAGAGAGTGTTGGAAGAAGGTGATATGGTTAAAATTGATATGGGATGTCATATAGAT GGCTTTATTGCTGTAGTTGCCCATACTCATGTGGTTAATGATGGTGCGGTGACTGGTCGAGCTGCTGATGTTATCGCAGCTGCAAATACTGCTGCAGAAG TTGCTTTGAGGCTTGTGAGACCTGGGAAAAAGAACAAAGATGTGACCGAGGCAGTTCAGAAGGTCGCTGCAGCGTACAACTGCAAAATTGTGGAGGGTGT CCTAAGTCACCAGCTAAAGCAGTTTGTGATAGATGGAAACAAGGTTATACTAAGTGTTACCAATCCAGAGACAAGAGTCGATGATGTCAAGTTTGAGGAG AATGAAGTTTATGCAGTAGATATTGTTACAAGTACTGGCGAAGGGAAGCCTAAACTGCTAGATGAGAAAGAAACGACCATATACAAGAGAGCCGTCGACA AGAACTATCACCTGAAGATGAAAGCATCTCGGTTCATTTTCAGCGAAATTAGCCAGAAGTTCCCAATCATGCCTTTCAGTGCCAGGGCATTGGAAGAGAA AAGGGCGAGGTTGGGATTGGTGGAATGCGTGAATCATGAGCTACTCCAGCCTTACCCTGTACTGCATGAGAAGCCGGGCGACTATGTGGCTCATATCAAG TTCACGGTCTTGTTAATGCCGAACGGTTCAGATAGGATAACTTCGCACCCTCTCCAGGAGTTGCAAGCCACGAAGACAGTAGAAGATCCTGAAATCAAGG CGTGGCTGGCTCTGGGCACCAAGTCGAAGAAAAAGGGTGGTGGCAAGAAGAAGAAAGCCAAGAAAGGCGGTGCTACTGAAGCAGAAGCAGAACCGATGGA CGAATCAACTGATGCTACTCCAGCATCCCAAGCTTGA
AA sequence Show only first row Show all	>Lus10003379 pacid=23175205 polypeptide=Lus10003379 locus=Lus10003379.g ID=Lus10003379.BGIv1.0 annot-version=v1.0 MTSLLNPALSIGLFNGRCRRLRSQLSVSISNRQLTVRAAESDTNEGFQLYSLLISSLPHSLTFRLAIEKPPASDKTRGNSGGSSFNQLLGIRGASQETNK WKIRLQLTKPVTWPPLVCGVVCGAAASGNFHWTMEDVTKSVVCMMMSGPFLTGYTQTMNDYYDRDIDAINEPYRPIPSGAISENEVLSQIWLLLLGGLGL AGILDVWAGHEFPIVLYLALGGSLVAYVYSAPPLKLKQNGWIGNLAMGISYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGVAVVNDFKSIEGDRAMG LRSIPVAFGAETAKWICVGTINVTQISIAGYLLGAGKPYHALALLALIVPQAFFQFEYFLKDPVKYDVKYQRLKELVRESGEIMSDEEREEEKELDLSSP EVVTKYKSAAEILNKALQSVVKECKPKAKVVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPTCVSVNNVVCHFSPLASDERVLEEGDMVKIDMGCHID GFIAVVAHTHVVNDGAVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAVQKVAAAYNCKIVEGVLSHQLKQFVIDGNKVILSVTNPETRVDDVKFEE NEVYAVDIVTSTGEGKPKLLDEKETTIYKRAVDKNYHLKMKASRFIFSEISQKFPIMPFSARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIK FTVLLMPNGSDRITSHPLQELQATKTVEDPEIKAWLALGTKSKKKGGGKKKKAKKGGATEAEAEPMDESTDATPASQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	0	1
AT2G18110			Translation elongation factor...		Lus10037618 [exp]	4.2	0.9347
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	4.4	0.9515
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	4.9	0.9475
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	5.1	0.9277
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	6.2	0.9410
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	7.9	0.9325
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	9.8	0.9277
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	10.6	0.9245
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	11.0	0.9365
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	11.7	0.9384

Compare expression of checked genes

Lus10003379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.