Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08970 142 / 3e-36 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT2G20560 89 / 5e-19 DNAJ heat shock family protein (.1) AT4G39960 87 / 3e-18 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 87 / 5e-18 DNAJ heat shock family protein (.1) AT4G28480 82 / 4e-17 DNAJ heat shock family protein (.1.2) AT1G80030 79 / 3e-15 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G79940 78 / 6e-15 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT3G62600 77 / 6e-15 ATERDJ3B DNAJ heat shock family protein (.1) AT3G17830 75 / 4e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 72 / 1e-13 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002852 [exp] 920 / 0 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017687 [exp] 89 / 8e-19 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 86 / 8e-18 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10000631 [exp] 86 / 2e-17 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 85 / 2e-17 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 81 / 8e-16 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031908 [exp] 80 / 1e-15 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10027803 [exp] 79 / 1e-15 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 79 / 1e-15 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120000 [exp] 666 / 0 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 89 / 1e-18 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 87 / 3e-18 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 80 / 1e-15 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G160200 [exp] 79 / 2e-15 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.014G122600 [exp] 78 / 2e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 77 / 4e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 76 / 1e-14 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 76 / 2e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 76 / 2e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10003380 pacid=23175210 polypeptide=Lus10003380 locus=Lus10003380.g ID=Lus10003380.BGIv1.0 annot-version=v1.0 ATGAATATCAATGGTGGCAGATTGGCATTGGCCGCAATCCTTGGTCTCTCTCTGATTCTGCTCACTGAGCAAGCCAAAAATAGCGACCCGTACAAGGTTC TTGGTGTTGAGAAGAACGCAAGCCAACGGGAAATCCAGAAAGCTTTTCACAAACTTTCTCTGCAGTATCACCCTGACAAGAACAAGAGTAAGAGCGCCCA AGCCAAGTTTTCCGAGATCAATAACGCATACGAAATCCTATCGGACGACGAAAAGAGGAAAAACTACGATCTGTACGGAAATGACCAGGGAAACCCTGGA TTTGATGCTGGCTACCCTGACCCTAGAAGAGGAGGATATACACACTTCACAGGTGGACAGGGCTCGAACGGGTTCGGCTTCAAACCTGGTGAATGGCAGA ATATGGGTGGGGAAGGAGGTTCTTCCCAGTCATTCTCATTTTCCTTTGGCGGTGGCATCAATGACATTTTATCCAATTTCTTTGGCGGTAATTCACGCGA TCCTCAGTCTGGTGGGTTTGGTGGCTCAACTCAGTCTCAAGGGAGGTCTCAATATGGATCCAGAAGCTCTCCTCCCAAGGGCATCAGGGACATCAACTCT CAAGTCTATAAGAAAGAAATTATCGACCAAGGAATGACATGGCTTATACTTTCATATACTCCCTCTCTGAGAGACACCGAATATTACGAGTCAATCATAC AGGAGGTTTCTGATCCACTTCAAGGAGCTTTAAAGGTTGGGAGCATGAACTGCGAGACTCAGAAATTGTTGTGCATGGAGCTAAGTATAACTCCTCGCAG GGAGCCAAGGTTGTTTATCTATACTTACAAGGATAAGAACAATAAAGGATCTTTGGTGGAATACACTGGTGATTTGGTCCCAAAGAATTTGAAGGCTTTT TGCCAAGACCATCTTCCAAGGTTCTCAGTACGGATAAAACTGAAGTCCTTCTCCAGCAATGTGGGGAAACTACCGAGAGTCTTGCTCCTTTCGACGAAAC GAGATACACCAGTGATGTGGCGAGCCCTCAGCGGGTTGTATCATAAGCGATTTGTGTTAAACGATGTAGAGGTGCATGATGTTAATGACGCAATGGTGAC GGAGCTAGGAGTGGACAGGCTTCCAGCTGTGGTGGGTTGGCTATCGAATGGTGAGAAGCATGTCCTGAAGACCGGCATTTCGGCCAAGGATCTGAAATCT GGGATTCAGGATCTTAGCAGGCTACTGGATGGGTTTGAAAAGAAGAATAAGAAGGTCCCCAATTCCTCTTTCGGTGAGGAGAAAGTACCATTGCTTACAG GATTAAACTACGATGATTTATGCGGGGAGAAGATCCCGGTTTGCCTGATTGGTGCCTTCAGAACTTCAAGAGCAAGGGAGAAGCTCGAATCCATTCTCTC CGCGGTTTCTCAAAAGTCGCTATCGAGGCGGCCCAGTTCGGTGGCCGGCTCTCGAGACGCAGTCTCGTACGCACTCTTGGATGCTGCTAAGCAGCCAACG TTCATGAGCGCATTCGATAGGCAAGGGTTTAAGTCGTCGGACTACATGTTGATAGCCTACAAGCCTAAGAAGGGGAAGTTTGTGAAGTTTGAAGGTGAAA TGAGCATAGAGCCCGTGGAGGCATTCATCAGTTCTGTTCTAAACGGCGATGTTCAGTTCACCAAAACTCGGCAGAAACCAGTGATCAAGTGA
AA sequence Show only first row Show all	>Lus10003380 pacid=23175210 polypeptide=Lus10003380 locus=Lus10003380.g ID=Lus10003380.BGIv1.0 annot-version=v1.0 MNINGGRLALAAILGLSLILLTEQAKNSDPYKVLGVEKNASQREIQKAFHKLSLQYHPDKNKSKSAQAKFSEINNAYEILSDDEKRKNYDLYGNDQGNPG FDAGYPDPRRGGYTHFTGGQGSNGFGFKPGEWQNMGGEGGSSQSFSFSFGGGINDILSNFFGGNSRDPQSGGFGGSTQSQGRSQYGSRSSPPKGIRDINS QVYKKEIIDQGMTWLILSYTPSLRDTEYYESIIQEVSDPLQGALKVGSMNCETQKLLCMELSITPRREPRLFIYTYKDKNNKGSLVEYTGDLVPKNLKAF CQDHLPRFSVRIKLKSFSSNVGKLPRVLLLSTKRDTPVMWRALSGLYHKRFVLNDVEVHDVNDAMVTELGVDRLPAVVGWLSNGEKHVLKTGISAKDLKS GIQDLSRLLDGFEKKNKKVPNSSFGEEKVPLLTGLNYDDLCGEKIPVCLIGAFRTSRAREKLESILSAVSQKSLSRRPSSVAGSRDAVSYALLDAAKQPT FMSAFDRQGFKSSDYMLIAYKPKKGKFVKFEGEMSIEPVEAFISSVLNGDVQFTKTRQKPVIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10003380 [exp]	0	1
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	6.9	0.8732
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	7.7	0.8722
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	11.9	0.8654
AT1G44414			unknown protein		Lus10018166 [exp]	13.4	0.8492
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	15.2	0.8273
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	16.4	0.8504
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	17.0	0.8499
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	20.8	0.8469
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	21.9	0.7882
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	23.1	0.8424

Compare expression of checked genes

Lus10003380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.