Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17140 53 / 2e-07 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002202 [exp] 110 / 6e-30 AT3G51750 54 / 4e-10 unknown protein Lus10006816 [exp] 101 / 3e-25 AT4G17140 59 / 8e-10 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10039773 [exp] 74 / 1e-16 AT4G17140 68 / 2e-14 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 69 / 9e-13 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10011036 [exp] 69 / 1e-12 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148800 [exp] 50 / 2e-06 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003381 pacid=23175218 polypeptide=Lus10003381 locus=Lus10003381.g ID=Lus10003381.BGIv1.0 annot-version=v1.0 ATGAATGAACACCCCTCCATGCAAGTCTGGGAAGATACTCAGACCAGAATTCCCTTATTGTTTACTACTTCCGCTTGTGTCACGAAGAGTGCAACTGCTT TTGATTCTCCATTTGGCATGTTCTGCTACAAACCTTTTGGCTTGAAGGTGGATTGGTGTTTGGTTGTGAAGGCTTCTCCGAGTTACATGACTATGGAAAT GGTGGATGATCCCGACTTTGATTGCATTTCCAGGGCTAAGTGGAAGTCTCAAATAAAGGACAAAGTAGCAAACATGGTGCTGCCCTCTGGTGTGTGTGAG CATAGTTTCTTGAAAGTCCTAATTAGTGGCAGGTTAGATTCATCTGCAAGCTACAACTGTATAGGGGAAACATTATCTTGTCAAAGCTATGGAAGTCCCA AAATCAAACTCGTCCCTGGTAATTCACCTCTGCCACTTGTCATTCTTCCTATTCTTCTGATGATAGGAAGCAAACGCCTGTCCCTAAAAATCTCAAAAAC CCTTGAATTGCTGAGGCTCAAGATTTGGAGGAAATCAAAGTTCAGAGAAAGAAAAAAAATGGAAGACTGTGCAATGGGAACTCCTGATATCTACCCAAAC GACGAGGTACAAGTTGCACCGGAAGTCGGTAGTGATGATACTTGCACGGCGGCGGATGACCCAGTGGTAGTGGAGAGCAAAGATGAAGAGAAGAAAGGAG GGATCTTGAACAGTCTCCTTGCCAACTTGGTTGCTCCTCTCAGCCCAAGAGCCTCATCGCCGGAAGAAGGTAAAGATCATCGGAGGATGCGCCGCCGGCA GAGAAGGAAAGCAGAGAAGGAAAGCGGAGGAGGCGGAAATGGCGGGATAATCGAGAACATCGTTGGCGGGATAAATTTCATGTACATATAG
AA sequence Show only first row Show all	>Lus10003381 pacid=23175218 polypeptide=Lus10003381 locus=Lus10003381.g ID=Lus10003381.BGIv1.0 annot-version=v1.0 MNEHPSMQVWEDTQTRIPLLFTTSACVTKSATAFDSPFGMFCYKPFGLKVDWCLVVKASPSYMTMEMVDDPDFDCISRAKWKSQIKDKVANMVLPSGVCE HSFLKVLISGRLDSSASYNCIGETLSCQSYGSPKIKLVPGNSPLPLVILPILLMIGSKRLSLKISKTLELLRLKIWRKSKFRERKKMEDCAMGTPDIYPN DEVQVAPEVGSDDTCTAADDPVVVESKDEEKKGGILNSLLANLVAPLSPRASSPEEGKDHRRMRRRQRRKAEKESGGGGNGGIIENIVGGINFMYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	6.0	0.8749
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	6.0	0.8875
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	6.6	0.8641
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	10.9	0.8802
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	11.0	0.8641
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	12.0	0.8667
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	12.2	0.8760
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	14.7	0.8376
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	16.0	0.8745
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	16.6	0.8379

Compare expression of checked genes

Lus10003381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.