Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16835 213 / 6e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 196 / 3e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 194 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 196 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 192 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 195 / 3e-57 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 194 / 3e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 195 / 4e-57 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 194 / 4e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 193 / 4e-57 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019213 [exp] 489 / 5e-173 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004304 [exp] 315 / 4e-110 AT1G11290 123 / 2e-32 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006815 [exp] 296 / 3e-103 AT1G20230 116 / 6e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 206 / 8e-62 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004987 [exp] 202 / 8e-62 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 203 / 4e-60 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 202 / 6e-60 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 202 / 2e-59 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 199 / 9e-59 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119000 [exp] 213 / 6e-65 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 213 / 1e-64 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 210 / 3e-63 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 207 / 2e-62 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 207 / 3e-62 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 204 / 5e-62 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 206 / 8e-62 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 206 / 3e-61 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 202 / 5e-61 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 205 / 2e-60 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003382 pacid=23175212 polypeptide=Lus10003382 locus=Lus10003382.g ID=Lus10003382.BGIv1.0 annot-version=v1.0 ATGTACTTCAAATGTGGTGATACGGGATCATCCAGGAGATTGTTCGAAGGAAGGGTAATGAAGGATGTTGTGTCCTGGAACTCAATAATTACTGGATTTG CACATAACGGGCTTGCAGATGAATCACTTGTGATCTTCAGAGAGATGGTTCAGGGGAGGAATACAATTCCTAATCATGTGACCTTTCTAGGTGTCTTGTT TGCTTGTAGCCATACAGGATCACTTTCTGAAGCACTTGGTGTTCTAGAGCAGATGGAAAATAGTTATCATATTTTCCCAAGATCAGAACACTATGCAATC TTGGTTGATTTAGTAGGTAGGAAAAACAGACTGAGCGAAGCGATGGAGTTAGTCGAAAAAACTCCTGGTCTATCGGAGCATGCGGGGATATGGGGCGCTC TATTAGGTGCTTGTCGGATCCATCACAATGTGGGTCTTGCCATGAAGGCTGCGGAAACTCTATTCAAATTAGAACCCGGGAATCCTGGAAGATATGTCAT GTTAGCGAATGTTTATACATCAGCTAATAAATGGAGTGATGCTTCAAGAATGAGAAGGGAAGTGGATGAAAAAGGTCTAGTTAAAGATGTAGCTTACAGT TGGATTGAGGTGAGGAATGAGAGGCATGAGTTTGTGGCCAAGGACAAGGCTCACAGACAGATACAAGAAGTATATGAAGCAATCCCTCGACTACTTGATC ATATGAGGGAAGCTGGACACTGGCCTTCCACAAATGACTTTGGATCGTCGGAGAAGATGATGTCCTAG
AA sequence Show only first row Show all	>Lus10003382 pacid=23175212 polypeptide=Lus10003382 locus=Lus10003382.g ID=Lus10003382.BGIv1.0 annot-version=v1.0 MYFKCGDTGSSRRLFEGRVMKDVVSWNSIITGFAHNGLADESLVIFREMVQGRNTIPNHVTFLGVLFACSHTGSLSEALGVLEQMENSYHIFPRSEHYAI LVDLVGRKNRLSEAMELVEKTPGLSEHAGIWGALLGACRIHHNVGLAMKAAETLFKLEPGNPGRYVMLANVYTSANKWSDASRMRREVDEKGLVKDVAYS WIEVRNERHEFVAKDKAHRQIQEVYEAIPRLLDHMREAGHWPSTNDFGSSEKMMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10003382 [exp]	0	1
AT1G20230			Pentatricopeptide repeat (PPR)...		Lus10006815 [exp]	1.0	0.8830
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	10.3	0.8402
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	11.6	0.8112
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	15.0	0.8052
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030603 [exp]	24.1	0.8003
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	36.2	0.7915
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10003383 [exp]	36.4	0.8023
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036836 [exp]	48.2	0.7720
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	54.0	0.7811
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	65.5	0.7564

Compare expression of checked genes

Lus10003382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.