Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 124 / 8e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 118 / 2e-30 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G21090 115 / 1e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G62890 114 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 112 / 9e-29 MEF21 mitochondrial editing factor 21 (.1) AT3G22690 112 / 1e-28 unknown protein AT5G08305 108 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 108 / 3e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 106 / 2e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 104 / 6e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004303 [exp] 371 / 2e-132 AT2G21090 146 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019213 [exp] 345 / 4e-117 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10011025 [exp] 187 / 3e-61 AT2G13600 77 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004114 [exp] 151 / 5e-47 AT3G13880 96 / 5e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014009 [exp] 146 / 6e-45 AT3G13880 89 / 2e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 137 / 5e-38 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10017386 [exp] 122 / 3e-33 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010183 [exp] 123 / 1e-32 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 116 / 7e-30 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 121 / 6e-32 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.017G091600 [exp] 121 / 1e-31 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 112 / 8e-29 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 112 / 9e-29 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 112 / 1e-28 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 112 / 2e-28 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 110 / 6e-28 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G316500 [exp] 109 / 1e-27 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 109 / 1e-27 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G217600 [exp] 109 / 1e-27 AT1G05750 548 / 0.0 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003383 pacid=23175225 polypeptide=Lus10003383 locus=Lus10003383.g ID=Lus10003383.BGIv1.0 annot-version=v1.0 ATGGATTCTGCCTCAGTAATCGACGAATACGGAAGTTTACTATCGACATGCATCACATCCAGGAACCTCAAATTGGGCAAGGCAATTCATTCCAACCTCA TCAAAACCGCGATCAACTTCAACTCCTTCGTCGTTAATCGTCTAATCGACATGTACTCCAAATGCAGTTCTATCGGATCCGCCCATAAGGCCTTCGACGA TCTCCCCTTCAAGAACGCTCGTTCCTGGAACACCATCGTCTCCGCCTGCTCCAAATTGGGTATGGTGAAAATGGCGCGGAAACTGTTCGATGAAATGCCT GACCGAAATCTCGTCAGCTACAACTCAATGATTTCGGGGCTTTCTCGTGGTGGGTATTACAAGGAGGCGTTGGGTATGTTCATGAGATTGCAGGAAGATT GCGTTGGGGGGTTTTGTTTGGATGACTTTACTGTTGTGAGTGTGGTGAGTTGTTGTGCGAGCTTTCGTGGGTTGGAATTGGTTCGTCAGCTGCATGGTGT GGGATTAGTTGTTGGGTTGGAAGGGAATGTGGTGTTGCTGAACTCTGTGGTTGATGCTTATGGGAAATGTGGGGAACCTGATGTTAGTTTCCGTGTATTT AGCAGGATGAATGAAAGGGATGTTGTGTCGTGGACGTAA
AA sequence Show only first row Show all	>Lus10003383 pacid=23175225 polypeptide=Lus10003383 locus=Lus10003383.g ID=Lus10003383.BGIv1.0 annot-version=v1.0 MDSASVIDEYGSLLSTCITSRNLKLGKAIHSNLIKTAINFNSFVVNRLIDMYSKCSSIGSAHKAFDDLPFKNARSWNTIVSACSKLGMVKMARKLFDEMP DRNLVSYNSMISGLSRGGYYKEALGMFMRLQEDCVGGFCLDDFTVVSVVSCCASFRGLELVRQLHGVGLVVGLEGNVVLLNSVVDAYGKCGEPDVSFRVF SRMNERDVVSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10003383 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	8.7	0.9026
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	9.2	0.8926
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030603 [exp]	9.4	0.8620
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10028662 [exp]	10.3	0.9004
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	13.5	0.9002
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	21.8	0.8883
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	22.1	0.8776
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	23.8	0.8709
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	24.1	0.8815
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	27.2	0.8762

Compare expression of checked genes

Lus10003383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.