Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01310 829 / 0 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002216 [exp] 1288 / 0 AT5G01310 862 / 0.0 APRATAXIN-like (.1) Lus10034226 [exp] 43 / 0.0002 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10029039 [exp] 43 / 0.0003 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120200 [exp] 952 / 0 AT5G01310 877 / 0.0 APRATAXIN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain CL0265 [flax] [poplar] HIT PF11969 [flax] [poplar] DcpS_C Scavenger mRNA decapping enzyme C-term binding
Representative CDS sequence Show only first row Show all	>Lus10003385 pacid=23175199 polypeptide=Lus10003385 locus=Lus10003385.g ID=Lus10003385.BGIv1.0 annot-version=v1.0 ATGGACGTGGACAGTGAAGAAGCTTCTAAACCTCAAGCAGTTGGCGAAGTCATAGGGAAATCTCCGGTCGTAGTTGTACTAGTGGGAGCTCCCGGCAGTG GCAAGTCCACCTTCTGCGAACACGTCATGCGATCGTCATCGCGATCCTGGACTCGCGTTTGCCAGGATACGATTAACAATGGTAAATCTGGGACAAAGCC TCAGTGCCTAAAGAGTGCAGCTAGTGCATTGAAGGATGGTAAGAGTGTGTTCATTGATAGATGCAATCTGGATAGAGAGCAGCGTGCTGAGTTTGTGAAG CTCCAGGGTGCAAAAAAAGATGTGCATGCTGTAGTGCTTGATCTTCCGGCTCAGCTCTGTATATCTCGATCCGTGAAACGCACTGGCCATGAAGGACATC TGCAAGGTGGAAAAGCTGCCGCAGTTGTAAATAGAATGCTTCAAAAGAAGGAACTGCCCCAGCTTAATGAAGGGTTTAGTAGAATCACCTTTTGCCAGAA TGAAAGTGAAGTCGAGGCTGCAATTAAGACGTACAGTGAGCTTGGTCCTGAAGAATCTCTCCCAGACGGTTGTTTCGGGCAGAAAACGCAGAAGGCAAAA GTCCAACTTGGCATAATGAAATTCCTAAAGAAAGTTGATACTTCTTCCAGCAAAGATTCGAAATCACTTGGTGCTTCAAGTACGGCTTCTAATCTAAACA GCAATGAAAATGATACTCACCTGAAAGGACAAGAGAGTGTTCGTTCTGAAGGTGCCAGTAAACAGATTCAAGAAATTCGATCCCCACCGAAGGTTTCTCT AAAGGATGATGCTTCCTTCTGCAATGTTCCCACTCTGGCATTTCCATCCATTTCGACATCAGATTTTCAGTTTGACAATGAAAGGGCTTCTGATATCATT GTTGAAAAAGCAGAAGAGTTTGTGAATAAGCTCGGGAATGCCAGACTTGTTCTTGTGGACTTGAGCCACAGATCAAGAATATTGTCTTTGGTTAAGACAA AAGCTGCTCATAGAAACATTGATTCAAACAAGTTCTTCACTTTTGTTGGAGATATAACTAACCTCTACTCTCAAGGTGGTCTCCAGTGCAACGTTATAGC TAATGCAGCCAACTGGCGCCTTAAGCCAGGAGGTGGAGGTGTAAATGCTGCTATCTTCAGTGCAGCTGGTCCAGCACTTGAAATTGCTACGAAGGAGTGT GCAAAATCTCTGGACCCTGGACATGCCATAGTTGTTCCACTTCCTTCAGAATCACCCTTACACTGTAGAGAAGGAATAACCCATGTCATACATGTCGTAG GTCCAAACATGAACACTCAAAGACCCAACTGTCTCAACCATGATTACGCCAAAGGATGTCAAATTCTCCGTGAAACATACACCGCACTATTTGAAGGTTT TGCATCTGTAGTGAAGACCCAGGTGAAAACAAGTGGAGAGAACTCAGATTCAAATTCTCCTAAAAGCCTTCCATTGATCAGCGAGCAAAAGCACAAAAGA GACGGCGAATCTGTCTCCACAGGGAACTCACGAAAAAGGCGTCCTGGCTCTTCGAAGAACTGGGGCTCATGGGCTCAAGCTCTGTATGATATCGCCGTGC ATCCCGAGAAGCATGAAGGTGAATTGCTGGAGGTTCGTGACGATGTTGTCGTGCTCAACGATCGATATCCGAAGGCAAAAAAGCATGTGTTAGTGGTGAC TCGGCATGAAGGTCTGGATCAACTCGCCGATGCAAACGAAGAACACATTCAACAGTTGTTCGCAATGCATTCCGTGGGCTTGAAATGGGCTGAACATTTC CTGCAAGAAGATTCATCTCTAGTCTTCCGACTCGGATATCACTCTGAACCGTCGATGCGACAGCTACACTTGCACGTTATCAGCCAGGATTTCAACTCGA GCCATCTGAAGAACAAGAAACACTGGAACTCCTTCAATACCGTCTTCTTTAGAGATTCTGCTGACGTTATGGAAGAAATCAAAAGCCACAGTAAAGCAAA ACTCGAAGACAACGAGAAGTATATGGCGACGGAGCTGCGATGTCATCGATGTAGGAGCGCGCATCCTAACATGCCCAAGTTGAAGTCGCACGTCCAACAA TGCCGAGCTCCGTTTCCGTCGAGCATGCTCGAGAATGGCCGGTTAGTGTCCGGAAAATAA
AA sequence Show only first row Show all	>Lus10003385 pacid=23175199 polypeptide=Lus10003385 locus=Lus10003385.g ID=Lus10003385.BGIv1.0 annot-version=v1.0 MDVDSEEASKPQAVGEVIGKSPVVVVLVGAPGSGKSTFCEHVMRSSSRSWTRVCQDTINNGKSGTKPQCLKSAASALKDGKSVFIDRCNLDREQRAEFVK LQGAKKDVHAVVLDLPAQLCISRSVKRTGHEGHLQGGKAAAVVNRMLQKKELPQLNEGFSRITFCQNESEVEAAIKTYSELGPEESLPDGCFGQKTQKAK VQLGIMKFLKKVDTSSSKDSKSLGASSTASNLNSNENDTHLKGQESVRSEGASKQIQEIRSPPKVSLKDDASFCNVPTLAFPSISTSDFQFDNERASDII VEKAEEFVNKLGNARLVLVDLSHRSRILSLVKTKAAHRNIDSNKFFTFVGDITNLYSQGGLQCNVIANAANWRLKPGGGGVNAAIFSAAGPALEIATKEC AKSLDPGHAIVVPLPSESPLHCREGITHVIHVVGPNMNTQRPNCLNHDYAKGCQILRETYTALFEGFASVVKTQVKTSGENSDSNSPKSLPLISEQKHKR DGESVSTGNSRKRRPGSSKNWGSWAQALYDIAVHPEKHEGELLEVRDDVVVLNDRYPKAKKHVLVVTRHEGLDQLADANEEHIQQLFAMHSVGLKWAEHF LQEDSSLVFRLGYHSEPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTVFFRDSADVMEEIKSHSKAKLEDNEKYMATELRCHRCRSAHPNMPKLKSHVQQ CRAPFPSSMLENGRLVSGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	3.3	0.9098
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	4.5	0.8947
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	6.8	0.8963
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	7.7	0.8951
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	12.2	0.8929
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10040194 [exp]	17.0	0.8879
AT1G73460			Protein kinase superfamily pro...		Lus10031329 [exp]	17.3	0.8897
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	18.9	0.8758
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	21.6	0.8824
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	25.3	0.8739

Compare expression of checked genes

Lus10003385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.