Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01310 105 / 3e-24 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT3G21330 89 / 3e-19 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 82 / 5e-18 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G37800 77 / 2e-15 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT1G66470 77 / 2e-15 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G43175 76 / 2e-15 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G33880 76 / 8e-15 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 74 / 2e-14 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G27740 73 / 2e-14 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G67060 72 / 4e-14 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002213 [exp] 247 / 8e-81 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10039302 [exp] 132 / 1e-33 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10033488 [exp] 89 / 2e-20 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 91 / 3e-20 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 89 / 8e-20 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033592 [exp] 79 / 4e-16 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10017634 [exp] 78 / 5e-16 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10001068 [exp] 76 / 7e-15 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 76 / 1e-14 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120800 [exp] 120 / 2e-32 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.006G102600 [exp] 120 / 4e-32 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.007G044600 [exp] 91 / 1e-20 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 94 / 2e-20 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 88 / 1e-19 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G035800 [exp] 89 / 6e-19 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.007G108000 [exp] 86 / 9e-19 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G036000 [exp] 85 / 1e-17 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 79 / 8e-16 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027700 [exp] 79 / 1e-15 AT3G16520 339 / 3e-112 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain PF00183 [flax] [poplar] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Lus10003386 pacid=23175222 polypeptide=Lus10003386 locus=Lus10003386.g ID=Lus10003386.BGIv1.0 annot-version=v1.0 ATGGACTACTTCACCACCATGGCCAGCACGGCCAGCTCCTCCTCAACCAAAAAGAAGAAGAACAAACAACCCAATAATCCCAACCCAAACCCAAACCGAG CGGTTCGGCTCTCGACTGACCCGCAGAGCGTGGCAGCCAGAGAGAGGCGTCATCGTATCAGCGACCGGTTCAAGATCCTCCAGAGCCTCGTACCGGGCGG GTCCAAGATGGACACGGTGTCAATGCTCGAGCAAGCCATCAACTACGTCAAGTTCCTCAAGACCCAGATCGTTATCCACGAAACCCTCATGAATCAGCCG CCGCCACAACCAAATAATAATTACATCGAGGACGAGATGACGTCGTTTATGTTTACCGACCAAGTAGCAATGCTGCCGGATCTGAGCAATTACGATAGTA TCCCTGGGGAGGGTTCGGGTTTGTTGTACGAGGTGCCTGGTGGTGGATGCTCGTCACAGATGATGATGTACCCGCCGCCGGAGTGTTTTCTCGACGACGG AGGGATGCGTCTCGAGGATCCGAGTACTTTTGCGTCGAGGATTCATAGGATGCTGAAGTTAGGGCTTAGCATTGATGAGGAGGATGATGGTGTGGATGGT GGCGGTGATGCTGAGATGCGGGAGCTAGAGGAGGATAACGAGGAGAGCAAGATGGAGGAGGCTTTATTCCTCGATCTTCTTCTTCTCTATCTGGACAGCG TTTCTTCAATTTCTCCGGAGGTGATTGAATTGGGCTTCAATCCCACCGTGTTCTTTCAAATACCAACGAACCAGAACTCCAACCTCTGTGACCTCCTCTC CGATCTGGTCGGATCCAAGAGGATCAAAGCTCTAGTCCTCGATTTCTTCTGCAAATACGCCGTTAGAGTTGCCGGCGAGCTAGGAATCAAATGTTACTTG TACTTCACCAGTAGTTTGGCTGCTCTGGCACTGTTCCTTTATTTCCCTGTAATAGACGAGGGCTCCACAGTGAGTATCAGGGATTCCGATTCGCCATTAC CGCTTCCGGGACTGCCGTCGATTCCTCCGAGAGACATGCTGATGATAATGGCTGATCGGTGCTGCGATGCTTATCCTCATGTCATTGAAACAGGGTACAT CATGAGAGGATCTGCCGGACTGATTGTCAACGGTTTCAATTATCTCGAGGCTAACGTGCTCCGAGCTATCGTCGACTGGAGGTGTACGCCGGGGAGCCTC CCGCCACCGATTTACTGTGTGGGCCCCATCGTGGAAGAAAGGAAACAAAACACAGATAACAAATTGGGCGACCGTCGCCGGAATGAGGCAGCCATGGAGG ATTAA
AA sequence Show only first row Show all	>Lus10003386 pacid=23175222 polypeptide=Lus10003386 locus=Lus10003386.g ID=Lus10003386.BGIv1.0 annot-version=v1.0 MDYFTTMASTASSSSTKKKKNKQPNNPNPNPNRAVRLSTDPQSVAARERRHRISDRFKILQSLVPGGSKMDTVSMLEQAINYVKFLKTQIVIHETLMNQP PPQPNNNYIEDEMTSFMFTDQVAMLPDLSNYDSIPGEGSGLLYEVPGGGCSSQMMMYPPPECFLDDGGMRLEDPSTFASRIHRMLKLGLSIDEEDDGVDG GGDAEMRELEEDNEESKMEEALFLDLLLLYLDSVSSISPEVIELGFNPTVFFQIPTNQNSNLCDLLSDLVGSKRIKALVLDFFCKYAVRVAGELGIKCYL YFTSSLAALALFLYFPVIDEGSTVSIRDSDSPLPLPGLPSIPPRDMLMIMADRCCDAYPHVIETGYIMRGSAGLIVNGFNYLEANVLRAIVDWRCTPGSL PPPIYCVGPIVEERKQNTDNKLGDRRRNEAAMED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003386 [exp]	0	1
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	14.8	0.6817
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	15.3	0.6973
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	16.9	0.6956
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	31.5	0.6279
AT4G13800			Protein of unknown function (D...		Lus10022549 [exp]	41.5	0.6288
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	48.6	0.6247
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002276 [exp]	50.8	0.5901
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	60.9	0.5788
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	63.2	0.6241
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	65.2	0.5901

Compare expression of checked genes

Lus10003386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.