Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 385 / 5e-117 AtRLP7 receptor like protein 7 (.1) AT1G45616 377 / 3e-114 AtRLP6 receptor like protein 6 (.1) AT5G27060 374 / 2e-113 AtRLP53 receptor like protein 53 (.1) AT2G15080 368 / 5e-111 AtRLP19 receptor like protein 19 (.1.2) AT3G11080 364 / 6e-110 AtRLP35 receptor like protein 35 (.1) AT4G13920 361 / 3e-109 AtRLP50 receptor like protein 50 (.1) AT3G05660 357 / 8e-108 AtRLP33 receptor like protein 33 (.1) AT3G11010 357 / 1e-107 AtRLP34 receptor like protein 34 (.1) AT3G05650 348 / 1e-104 AtRLP32 receptor like protein 32 (.1) AT1G71400 320 / 1e-94 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 1494 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 988 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 976 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002215 [exp] 894 / 0 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10002214 [exp] 735 / 0 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10002212 [exp] 575 / 0 AT5G01300 226 / 4e-70 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2) Lus10016402 [exp] 536 / 6e-178 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10006825 [exp] 541 / 2e-175 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10019693 [exp] 513 / 9e-170 AT2G33050 295 / 1e-91 receptor like protein 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 1079 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 628 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120532 [exp] 609 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G437700 [exp] 527 / 1e-170 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 467 / 6e-148 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 451 / 1e-141 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G021400 [exp] 448 / 1e-140 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.001G389100 [exp] 441 / 7e-138 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G127101 [exp] 440 / 1e-137 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 431 / 6e-133 AT1G71400 395 / 1e-121 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003387 pacid=23175208 polypeptide=Lus10003387 locus=Lus10003387.g ID=Lus10003387.BGIv1.0 annot-version=v1.0 ATGAAACAACAGCTGCAGCAACTCATCTGGTATCTCTTGATGCCTCTTCTCTACACGCTTGTCTCTGGGAGATGCCAGGGAGACCAGCAATCGCTGCTGC TTCAGTTGAAGCAGGGATTTAATGTCAGCAGCTCATCCTCGTCTCGAAATCTGGCGAGGTGGGATTCAACTATTGATTGCTGTAATTGGTTTGGTGTTGG ATGTGATCCAGGTGGCCTCGGTCGTGTTATTCGTCTCAATTTGAGCAATGAATTGATCATGGGAGGATTTGGTAACTCCATGGCTTTGTTCAGTCTTCAA TATCTGCAGGTCCTGGATTTGTCTTTCAATAACTTCAACACGACTGTTCCAGCTGGGATTGGTAATCTTACTAATTTGAGGTACTTGAACTTATCAAGTG CTGGATTTTTCGGGCAAATTCCAGCAGAAATTTCTAGCTTGACGAAGTTGGTTGGTTTGGATCTCTCGATGCTTTATTTTCCGGGAGTCCTGTCCCTGAA ACTTGAGAATCCAAATCTGTCAGGACTTGTAAAGAATCTCGGTCAACTGGTTGATCTCAGACTTGATGGTGTGAATATATCTGCCCAAGGGAATCAATGG TGCCAGGCCTTAGCAGATTCTGCACTGCAGAATCTCGAATTGTTGAGCATGTCCAACTGTTTCCTTTCTGGCCCTTTTGATTCATCTCTTTCAAAACTTC AGTCTCTCTCCGTGATTCGTTTGGACAGCAACGAATTCTCCACTCCGATTCCTGATTTCTTTGCGAATTTCGGGAGCTTGACTGTCCTGCGACTCAGTAC TTGTGGGCTGAGTGGAACATTTCCGGCAAAGATATTTCAGATTCCAAGCTTGGAGGTTCTTGATTTGTCAAATAACGGATTGCTTCAAGGGGGTTTACCA GAATTTCCTCAGAATCACTCTATGCAGACTCTACTGCTCAGCGGTACAAACTTCTCAGGCGTTTTACCATCATCAATGGGAAATTTGGGCAAATTATCCC GGATAGAGCTTGAGGGATGCAATTTCAGTGGACCAATTACGAAGTCGATGGAAAATCTTACTCAACTGGCTTATGTGGACTTGGCATCCAACCATCTCAC AGGTCCAATTCCATCACTAGGCTTGTCTAAGAATTTAGCACATCTGGACTTGTCTTACAACCAGTTATCAGGTGATATACCCGCTCAATGGGAAAGCTTT GAAGAACTTGTCTATGTAGACCTCCGACACAATTCTTTCAATGGGAGCATTCCATCATCTTTGTTCACCATTCCATCCCTACAGAAGCTTCAGCTCTCTT TCAACCAATTTCGAGGTTGGGCTCCAGCAATTAACAATGCTTCCTTGGTTTTGGATACTCTGGATTTAAGCAGCAATAATTTAGAAGGTTCCATCCCTCG TGATATCTTCCAGATTCGATCACTTAAAGTTCTCTTGCTTTCATCTAATAGATTCAACGGAAGTGTACTGCTAAACTGGATTCAGTCCCTCCAGAATCTC ACTGCTCTTGACCTCTCATACAACAACTTGAAAATTGATGCAAGTAGCAACAATCCTACCTTGTCAAGCTTTCCTCAGTTCAGATCCTTGAAATTAGCAT CGAGCAATATGAGAATATTTCCTGAGTTGGGGAACCAATCAACGTTAACCCATCTAGACCTTTCGGACAACAATATCAAGGGGATAGTACCTCGCTGGAT TCTAGAATCAACTACTGTAGCTCATCTAAATCTCTCACACAACCATCTTGTGGGTCTCGAGGTACCTCTTTCTCTTCCTAGTCTAAATGTCTTAGACATG CATGACAACCAGCTTCAAGGTGATGTTCCTATTATTCCATTATCAACACTACCAATGACATATGTGGATTACTCCCACAACTTTCTCAACGGTTCCATTC CAGCTGAAATTAGCAATTACCTTTCCCTTGCCTTATTCTTTTCATTAGCAAACAATACCCTCAGCGGAGAAGTTCCTGCAAGCATTTGTACTGCCAAAAC TCTTCAAGTCCTTGATTTGTCAAGCAACAATCTGACTGGCCCAATTCCGAACAACAGATTATCAGATCGCTTCCCTTGTCTTCTGAAAAATAAAACCAAT TTGCGAGTCCTTGTCCTCAGGGGAAACCAGTTTCATGGAGATCTTGGATGCTATAATATCTCTGGTAATTGGGAAAAGCTTCAGATCGTTGACCTGGCTT TCAACAATTTTTCTGGTGAAGTGAACAGCAGGTGCTTAACTACATGGGAAGCCATGATGGGAGACAGAAATGGAATGGACGACCATCTCAAATTCGAGCC CTTCCACTTCACTCAACTCTACTATCAAGATTCCACAACTGTTACCACCAAGGGCCTTCAAATGGAATTCGTGAAGATCCTGACAGTATTCACTGCCATT GATTTCTCAAGCAACAACTTTCAAGGGCCAATACCGGAAAGCCTCGGGAAATTCAAAGCACTTTACGTCCTCAATTTCTCACACAACGGTTTCACTGGCG AAATTCCATCAACCTTAGGCAACGTGTCGCAGCTGGAGTCATTGGATCTCTCAAATAACAAGCTCACTGGTCGGATCCCGAGCGCACTCACAGAGTTGAC ATTTCTCTCAGCCCTGAACTTGTCATATAATCATCTATATGGACGCATCCCAACAGGACGCCAGTTCCAAACTTTCGAGAATTCTTCATTCGAAGGTAAT CCAAATTTATGCGGTAACCCTTTCACTAAATCCTGCTCAGATATCATCGTCACGCCTCCTGCTCAGAAGGAATCAGGGAAACCAAGCATCGACTGGGAGT TCATAGTCCCTGGGATCGGCTTTGGAGCTGGAGCAGCACTTGCGGTGGCACCATTACTTTTCAGCAAGAAGGCAAACAAGTGGCTCGACGATCACATTGA CAGAATCCTCCTGGTGCTTCTCCCACTTTTCGGATTGAGATACTACACAAGCAACGACTGGAGGAGGGTTCAGCCTGAAGAGATCCTCGACCATTACGTT TTTTATGACGATGATGAGGAGGACGAAGATGAAAGCTACGATGAATTCTTCCAAGGCAAGTACTGCGTATACTGCACGAAGCTTGATGCCACAAGAACAA TGGCTATCCACGATCCCAAGTGTACTTGCCGCCACTCACGTACAGGATCCACATTTTCTTCCCCCTTCTCTTCAACCACAACTCTATAA
AA sequence Show only first row Show all	>Lus10003387 pacid=23175208 polypeptide=Lus10003387 locus=Lus10003387.g ID=Lus10003387.BGIv1.0 annot-version=v1.0 MKQQLQQLIWYLLMPLLYTLVSGRCQGDQQSLLLQLKQGFNVSSSSSSRNLARWDSTIDCCNWFGVGCDPGGLGRVIRLNLSNELIMGGFGNSMALFSLQ YLQVLDLSFNNFNTTVPAGIGNLTNLRYLNLSSAGFFGQIPAEISSLTKLVGLDLSMLYFPGVLSLKLENPNLSGLVKNLGQLVDLRLDGVNISAQGNQW CQALADSALQNLELLSMSNCFLSGPFDSSLSKLQSLSVIRLDSNEFSTPIPDFFANFGSLTVLRLSTCGLSGTFPAKIFQIPSLEVLDLSNNGLLQGGLP EFPQNHSMQTLLLSGTNFSGVLPSSMGNLGKLSRIELEGCNFSGPITKSMENLTQLAYVDLASNHLTGPIPSLGLSKNLAHLDLSYNQLSGDIPAQWESF EELVYVDLRHNSFNGSIPSSLFTIPSLQKLQLSFNQFRGWAPAINNASLVLDTLDLSSNNLEGSIPRDIFQIRSLKVLLLSSNRFNGSVLLNWIQSLQNL TALDLSYNNLKIDASSNNPTLSSFPQFRSLKLASSNMRIFPELGNQSTLTHLDLSDNNIKGIVPRWILESTTVAHLNLSHNHLVGLEVPLSLPSLNVLDM HDNQLQGDVPIIPLSTLPMTYVDYSHNFLNGSIPAEISNYLSLALFFSLANNTLSGEVPASICTAKTLQVLDLSSNNLTGPIPNNRLSDRFPCLLKNKTN LRVLVLRGNQFHGDLGCYNISGNWEKLQIVDLAFNNFSGEVNSRCLTTWEAMMGDRNGMDDHLKFEPFHFTQLYYQDSTTVTTKGLQMEFVKILTVFTAI DFSSNNFQGPIPESLGKFKALYVLNFSHNGFTGEIPSTLGNVSQLESLDLSNNKLTGRIPSALTELTFLSALNLSYNHLYGRIPTGRQFQTFENSSFEGN PNLCGNPFTKSCSDIIVTPPAQKESGKPSIDWEFIVPGIGFGAGAALAVAPLLFSKKANKWLDDHIDRILLVLLPLFGLRYYTSNDWRRVQPEEILDHYV FYDDDEEDEDESYDEFFQGKYCVYCTKLDATRTMAIHDPKCTCRHSRTGSTFSSPFSSTTTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	0	1
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	1.0	0.9471
AT5G58950			Protein kinase superfamily pro...		Lus10025442 [exp]	1.4	0.9322
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	3.5	0.9254
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	4.0	0.9118
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	10.2	0.9229
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	10.5	0.8864
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	11.8	0.9013
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	13.4	0.9075
AT5G10190			Major facilitator superfamily ...		Lus10038972 [exp]	13.7	0.9043
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	17.1	0.8778

Compare expression of checked genes

Lus10003387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.