Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01300 200 / 1e-66 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002212 [exp] 281 / 2e-91 AT5G01300 226 / 4e-70 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121000 [exp] 217 / 4e-73 AT5G01300 173 / 5e-56 PEBP (phosphatidylethanolamine-binding protein) family protein (.1), PEBP (phosphatidylethanolamine-binding protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10003388 pacid=23175214 polypeptide=Lus10003388 locus=Lus10003388.g ID=Lus10003388.BGIv1.0 annot-version=v1.0 ATGGCCGACGAATTCAGAGTAGTGATTCCAGGAGTCGACCACGACGGCAAGCTACCGAGAAAGTACACCAGCGAGGGTCAAGGCGCGACCAAGAACGTGT CGCCACCGTTAGAATGGTACAACGTCCCACAGGGGACCAAGACATTCGCCGTGGTCCAGGACATCGACGCGCCCGACCCGGCGGGCCCGCTGGTCCCGTG GACCGTGTGGGTGGTCGAGAATATTCCAGTGACCGTTAAGCGGTTGCCTGAAGGGTTTTCAGGGAAAGGAGAGGAGCTAGGTGGGGAGTATGATGGTGTG AAGGAAGGGAATAATGACGAGAAGGTCCCTGGGTGGAGAACTCCGATGTTGCCGGGCCATGGGCATCGGCTTGAGTTCAAGTTGTTTGCTCTTGATTGTG AATTGAACCTTGGAAACAAGGTGACGAAGGAGAAGGTGGAGGAGGCTGTGGAAGGGCACGTTCTTGGAGAGGCGGTTCTGATATGCACGTTTTGA
AA sequence Show only first row Show all	>Lus10003388 pacid=23175214 polypeptide=Lus10003388 locus=Lus10003388.g ID=Lus10003388.BGIv1.0 annot-version=v1.0 MADEFRVVIPGVDHDGKLPRKYTSEGQGATKNVSPPLEWYNVPQGTKTFAVVQDIDAPDPAGPLVPWTVWVVENIPVTVKRLPEGFSGKGEELGGEYDGV KEGNNDEKVPGWRTPMLPGHGHRLEFKLFALDCELNLGNKVTKEKVEEAVEGHVLGEAVLICTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	2.2	0.8636
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	4.2	0.8418
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	4.6	0.8204
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015431 [exp]	4.9	0.7810
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	5.5	0.8122
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	6.3	0.8191
					Lus10040545 [exp]	8.4	0.7931
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10026598 [exp]	9.2	0.7461
AT5G08450			unknown protein		Lus10004298 [exp]	9.5	0.7675
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	9.9	0.7926

Compare expression of checked genes

Lus10003388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.