Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 417 / 3e-129 AtRLP6 receptor like protein 6 (.1) AT3G11010 410 / 9e-128 AtRLP34 receptor like protein 34 (.1) AT1G47890 409 / 6e-126 AtRLP7 receptor like protein 7 (.1) AT4G13920 402 / 1e-124 AtRLP50 receptor like protein 50 (.1) AT3G11080 397 / 2e-122 AtRLP35 receptor like protein 35 (.1) AT2G15080 393 / 2e-120 AtRLP19 receptor like protein 19 (.1.2) AT3G05650 377 / 2e-115 AtRLP32 receptor like protein 32 (.1) AT3G05660 372 / 8e-114 AtRLP33 receptor like protein 33 (.1) AT5G27060 374 / 2e-113 AtRLP53 receptor like protein 53 (.1) AT1G71400 356 / 5e-108 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003387 [exp] 1120 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10042239 [exp] 1075 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 1055 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10002215 [exp] 823 / 0 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006825 [exp] 647 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10016402 [exp] 629 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10002214 [exp] 617 / 0 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10019693 [exp] 605 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004310 [exp] 597 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 1006 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 678 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 674 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 585 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 531 / 2e-172 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G389100 [exp] 510 / 2e-164 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G127000 [exp] 499 / 2e-160 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 493 / 8e-158 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G027600 [exp] 487 / 5e-154 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.011G021400 [exp] 471 / 3e-149 AT3G11080 375 / 2e-114 receptor like protein 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003389 pacid=23175220 polypeptide=Lus10003389 locus=Lus10003389.g ID=Lus10003389.BGIv1.0 annot-version=v1.0 ATGACATCCAACCAACTCACATGGTTCCTCTTGATGTACACGCTTGTGGGCAGCCAAGTAGGTTCAGTCTCTGGCCAATGCCAGGGAGGCCAGCAATCAC TTCTGCTGCAGACCAAGCAGGGATTTACTTCCAGCTCATCATTGTCTCGAAATCTGGCGAGGTGGGATTCAAGCTTGGATTGCTGTAATTGGCCTGGTAT AGGATGTGATCCGGGTGGCCTCGGTCGTGTTGTTCGTCTCAATTTGAGCGGCGAAATGATCACGGGAGGATTTGATAATTCCATGGCTTTGTTCAGACTT CAATATCTGCAGGTCCTGGATTTGTCTTTCAACAGCTTCGACAGGACTATTCCAGCTGGAATTGGTAATCTTACTAATTTGAGGTATCTGAACTTATCAA GTGCTGGATTCTTCGGGCAAATTCCAGCAGAAATTTCTAGCTTGTCGAAGTTGGTTGGTTTGGATCTCTCGATGCTTTATTTTCCGGGAGTCCTGTCCCT GAAACTTGAGAATCCGAATCTGTCAGGACTTGTAAAGAATCTTGGTCAACTGGTTGATCTCAGACTTGATGGTGTCGATATATCTGCCCAAGGGAATCAA TGGTGCCAGGCCTTGGCAGATTCTTCGCTGCAGAATCTCAAAGTGTTGAGCATGTCCAACTGTTTCCTTTCTGGCCCTTTTGATTCCTCTCTTTTGAAAC TTCGGTCTGTCTCGGTGATTCATTTGGACACCAACGAATTCTCCACTCCGATTCCTGATTTCTTTGCCGATTTTGGAAGCTTGACTGTCCTGCGGCTCAG GACTTGCGGGTTGAGTGGAACATTTCCCGCAAAGATATTTCAGATTCCAAGCTTGGAGGTTCTTGATTTGTCAAATAACGGATTGCTTCAAGGGGTTTTA CCAGAATTTCCTCAGAATCACTCTATGCAGACTCTACTGCTCAGCGGTACGAACTTCTCAGGCGTTTTACCATCATCAATGGGCAATTTGGGCAAGTTAT CCCAGATAGACCTTGAGGACTGCAGTTTCACTGGACCAGTTCCGAAGTCGATGGAAAATCTGACTCAACTGGCTTATGTGGACTTGGCATCCAACCATTT CACAGGTCCAATTCCATCACTAGGCTTGTCTAAGAATTTAGCACATCTAGACTTGTCTTACAACCAGTTATCAGGTGATATACCCGCTCAATGGGAAAGC TTTGAAGAACTTGTCTATGTAGACCTCCGACACAATTCTTTCAATGGGAGCATTCCATCATCTTTGTTCACCATTCCATCCCTACAGAAGCTTCAGCTCT CTTTCAACCAATTTCGAGGTTGGGCTCCAGCATTTAACAATGCTTCCTTGGTTTTGGATACTCTGGATTTAAGCAGCAATAATTTGGAAGGTTCCATCCC TCGTGATATCTTCCAGATTCGATCACTTAAAGTTCTCTTGCTTTCATCTAATAGATTCAATGGAAGTGTACTGCTAAACTGGATTCAGTCCCTCCAGAAT CTCACTGCTCTTGACCTCTCATACAACAACTTGACGATTGATGCAAGTAGCAACAATCCTACCATGTCAACCTTTCCTCAGTTCAGATCCTTGAAATTAG CATCGAGCAATATGAGAATATTTCCTGAGTTGGGGAACCAATCAACGTTAGCCCATCTAGACCTTTCGGACAACAATATCAAGGGGATAGTACCTCGCTG GATTCTGGAATCAACTTCTCTAGCTCATCTAAATCTCTCACAGAGCTCATCTAAATCTCTCACACAACCATCTTGTGGGTCTCGAGCACTACCAATGACA TATGTGGATTACTCCCACAACTTTCTCAACGGTTCCATTCCAGCTGAAATTAGCAATTACCTTTCCCTTGCCTTATTCTTTTCATTATCAAACAACAGCC TCACAGGAAAAATCCCGACAAGCATTTGTACTGCTGAATTTCTTCAAGTCCTTGATTTGTCAAACAACAATCTGGACGGCTCAATTCCGAACTGTTTAAT GGAGAATGTCAGTATACTTTCTGTTCTGAATCTAAGAGGCAATAGGTTCAATGGCAATATACCTGACACGTTCCAGGAATCTTGTTCACTACAGACTCTT GACCTCAGCAGGAACCAATTAGAGGGAAGATTTCCGAAGTCCTTGAGCAACTGCACAATATTGGAAGTTCTAGATCTTGGCAACAACAGATTATCAGATC ACTTCCCCTGTCTTCTGAAAAATAAAACCAATTTGCAAGTCCTCATCCTGAGGGGAAACCAGTTTTACGGAGACATTGGATGCTATAATATCTCCCGTAA TTGGGAAAAGCTTCAGATCGTTGACCTGGCTTTCAACAATTTTTCTGGTGAAGTGAACAGCAGGGGCTTAACTACATGGGAAGCCATGATGGGACAAAGA AATGGAATGGATGACCACCTCCAATTTGAACCCTTCCAGTTTACTCAACTCTACTATCAAGATTCCACAACTGTTACCACCAAGGGACTTCAAATGGAAT TCGTGAAGATCCTGACAGTGTTCACAGCCATTGATTTCTCAAGCAACAACTTTGAAGGGCCAATACCAGAAAGCATTGGAAAATTCAGATCACTTTACGT CCTCAATTTCTCACACAACTCTTTCACTGGCCCAATTCCATCAGTCTTCGGCAACCTGTCACAGCTGGAGTCACCGGATCTCTCAAATAACAAACTCACT GGTCAGATCCCGCAGGAGCTCACAGAGTTGACATTTCTTTCAGCACTGAACTTGTCAGATAATCATCTGGATGGACGCATCCCAACGGGGAGTCAATTCA ACACATTCGACAACTCTTCATTCGGCGGCAATCCAGGTTTATGCGGCAGCCCTTTCACAAAACCCTGCTCAGGTAACAGCACCACGCCTCTTTCAGAGCG AGAGGATGAATCAGCAATCAATTGGAATCTACTAAGCATAGAATTCGGCATTATCGTAGGATTCGGTGCAGTTACCTTACCTGCGATGTTATGGCCGAGG TTTCGGAACTGGTACTGGCCAAGGATCGATTCTCTCATCATCGCAGTCTTCCCTCAGTTCAGGAGTCACAAGGCGAATGCGACGCGGCGGAGAGCCGGAG AACGTCGTAGCGGACGGTAA
AA sequence Show only first row Show all	>Lus10003389 pacid=23175220 polypeptide=Lus10003389 locus=Lus10003389.g ID=Lus10003389.BGIv1.0 annot-version=v1.0 MTSNQLTWFLLMYTLVGSQVGSVSGQCQGGQQSLLLQTKQGFTSSSSLSRNLARWDSSLDCCNWPGIGCDPGGLGRVVRLNLSGEMITGGFDNSMALFRL QYLQVLDLSFNSFDRTIPAGIGNLTNLRYLNLSSAGFFGQIPAEISSLSKLVGLDLSMLYFPGVLSLKLENPNLSGLVKNLGQLVDLRLDGVDISAQGNQ WCQALADSSLQNLKVLSMSNCFLSGPFDSSLLKLRSVSVIHLDTNEFSTPIPDFFADFGSLTVLRLRTCGLSGTFPAKIFQIPSLEVLDLSNNGLLQGVL PEFPQNHSMQTLLLSGTNFSGVLPSSMGNLGKLSQIDLEDCSFTGPVPKSMENLTQLAYVDLASNHFTGPIPSLGLSKNLAHLDLSYNQLSGDIPAQWES FEELVYVDLRHNSFNGSIPSSLFTIPSLQKLQLSFNQFRGWAPAFNNASLVLDTLDLSSNNLEGSIPRDIFQIRSLKVLLLSSNRFNGSVLLNWIQSLQN LTALDLSYNNLTIDASSNNPTMSTFPQFRSLKLASSNMRIFPELGNQSTLAHLDLSDNNIKGIVPRWILESTSLAHLNLSQSSSKSLTQPSCGSRALPMT YVDYSHNFLNGSIPAEISNYLSLALFFSLSNNSLTGKIPTSICTAEFLQVLDLSNNNLDGSIPNCLMENVSILSVLNLRGNRFNGNIPDTFQESCSLQTL DLSRNQLEGRFPKSLSNCTILEVLDLGNNRLSDHFPCLLKNKTNLQVLILRGNQFYGDIGCYNISRNWEKLQIVDLAFNNFSGEVNSRGLTTWEAMMGQR NGMDDHLQFEPFQFTQLYYQDSTTVTTKGLQMEFVKILTVFTAIDFSSNNFEGPIPESIGKFRSLYVLNFSHNSFTGPIPSVFGNLSQLESPDLSNNKLT GQIPQELTELTFLSALNLSDNHLDGRIPTGSQFNTFDNSSFGGNPGLCGSPFTKPCSGNSTTPLSEREDESAINWNLLSIEFGIIVGFGAVTLPAMLWPR FRNWYWPRIDSLIIAVFPQFRSHKANATRRRAGERRSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	0	1
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	1.7	0.8281
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	3.9	0.7621
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	4.0	0.7819
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	4.2	0.7816
					Lus10009962 [exp]	9.2	0.7595
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	9.9	0.6891
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	12.2	0.7665
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	13.7	0.7307
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	15.9	0.7452
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	18.4	0.7302

Compare expression of checked genes

Lus10003389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.