Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43770 236 / 4e-79 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 67 / 7e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 67 / 8e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 66 / 2e-13 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 66 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 61 / 1e-11 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G64730 59 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 57 / 2e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 55 / 9e-10 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 54 / 3e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012230 [exp] 256 / 8e-87 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 250 / 2e-84 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002211 [exp] 100 / 6e-29 AT2G43770 96 / 6e-26 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 68 / 4e-14 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 68 / 4e-14 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 67 / 7e-14 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 67 / 7e-14 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 63 / 2e-12 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 62 / 3e-12 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G096900 [exp] 241 / 7e-81 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G128001 [exp] 107 / 3e-31 AT2G43770 196 / 2e-63 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 68 / 3e-14 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 65 / 3e-13 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.008G002300 [exp] 63 / 2e-12 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 61 / 7e-12 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 58 / 9e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 57 / 2e-10 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G026800 [exp] 56 / 5e-10 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 53 / 4e-09 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003390 pacid=23175227 polypeptide=Lus10003390 locus=Lus10003390.g ID=Lus10003390.BGIv1.0 annot-version=v1.0 ATGAAGCTCGAGGGGCATCAGGACATGGTCACAGGAATGCAGCTGAGCCCTGACGGCTCTTATCTTCTGACGAATGGTATGGATTGCAAGCTGTGTGTAT GGGATATGAGGCCTTACGCTCCTCAGAACTGGTGCCTGAAGGTTCTCGAAGGGCATCAGCAAATTTTCGAGAAGAATCTGCTGAAATGCAGCTGGTCTCC CGATGGAATTAAGGTGAGTGCTGGTACGTCGGACCGGATGGTGTACATATGGGACACGACTTCGAGACGGATACTGTACAAGCTTCCTGAGCACACGGGG TCGGTTAATGAGTGTGTGTTTCACCCGACCGAACCGATTGTCGGGTCGTGCGGGAGTGACAAGCAGATTTACCTTGGGGAGATATGA
AA sequence Show only first row Show all	>Lus10003390 pacid=23175227 polypeptide=Lus10003390 locus=Lus10003390.g ID=Lus10003390.BGIv1.0 annot-version=v1.0 MKLEGHQDMVTGMQLSPDGSYLLTNGMDCKLCVWDMRPYAPQNWCLKVLEGHQQIFEKNLLKCSWSPDGIKVSAGTSDRMVYIWDTTSRRILYKLPEHTG SVNECVFHPTEPIVGSCGSDKQIYLGEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43770			Transducin/WD40 repeat-like su...		Lus10003390 [exp]	0	1
					Lus10023751 [exp]	3.0	0.7605
AT1G75280			NmrA-like negative transcripti...		Lus10042968 [exp]	18.8	0.7150
AT2G03430			Ankyrin repeat family protein ...		Lus10036968 [exp]	25.0	0.6909
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10017742 [exp]	28.8	0.7199
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10002810 [exp]	73.2	0.6401
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	210.9	0.6228
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	268.3	0.6151

Compare expression of checked genes

Lus10003390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.