Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80930 403 / 1e-128 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G52325 99 / 3e-24 Initiation factor eIF-4 gamma, MA3 (.1) AT5G17930 63 / 7e-10 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002210 [exp] 896 / 0 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 221 / 4e-67 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10019865 [exp] 58 / 3e-08 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10014048 [exp] 56 / 1e-07 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121100 [exp] 424 / 2e-136 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Potri.013G061400 [exp] 64 / 2e-10 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10003392 pacid=23175224 polypeptide=Lus10003392 locus=Lus10003392.g ID=Lus10003392.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAGTACAGCAGTGACTCCAGCGACGACGATGGAGACAGGCATCGTCGCAGCTCAAGGAAGGATCTAGAATTGGATTCCTCTTCGGATTCTG ATGGAAAAACAAAGATCGATAGGAAGGACGAGCGGAGGAACGAAGATCGGCGGCGTAAAGAAGTTCAGGAAAGTTCCGATGAAGAAGGAGAGTTGGTGGA GAGAGAGGACGGTGATAGACGAGGCAAGGAGAAGAACAGCAGCGCGCGGGATGGTAACAAGATTGCTGATGAGGAAGGGGATAGACGAGATAGCTCGGAT AAGGATAGAAGTAGAAGTCGTAGGCATGATGATTACAGAGGTAGGTATCGGCATTCGCGTAGGGATGCAGATCGAAGAGCAGATCGACACAGGGATAGGG ATTATGATGATAGGGATAGAAGGCACCGAACCAGAGATGATGAAGGCGGCGATAAGCATAGAAGAGACCGTGATAGAGATAGCAGGCGGGATGAATCACG GAACGAGAAAGTGAAGGAGGAAGCAAAGCCTGAATTGGCTGCGCCAGATGTGAACTCGATTCCTGCTGCTTGGAGCTCCGGGAAGAGTGGAGGAGTTTAC ATTCCTCCGTTTAAGTTGGCGAGGATGATGAAAGAGGTGGATGATAAGAGCAGCGTTGAGTATCAGAGACTGACTTGGGATGCCTTGAGGAAGAGTATCA ATGGGCTTGTGAACAAGGTCAATGCTGCCAATATCAAGAACATAATTCCTGAGCTGTTCTCGGAGAATTTGATCAGAGGAAGGGGTCTTTTCTGTAGGTC TTGTATGAAGTCACAGATGGCATCTCCAGGGTTCACTGATGTGTTTGCTGCTTTGGCTGCTGTGGTAAATACCAAGTTCCCGGAGGTTGGTGAGCTTCTA TTGAAGAGGATAGTCTTGCAGCTTAAGAGAGCTTACAAACGTAATGACAAGCCTCAGTTGTTGGCTGCCGTCAAATTTATAGCGCATTTGGTTAACCAGC AAGTGGCTCACGAGATTATCGCTCTGGAGCTCCTTGCTGTGTTGCTCGCCAATCCTACTGATGATAGTGTGGAGGTAGCTGTGGGGTTCGTGATAGAAAG TGGCTCGATGCTTCAGGACTTGTCACCGAAAGGACTTCACGGAGCTTTTGAGAGGTTTCGTGCCATTCTACACGAAGGAGAGATAGACAAGCGTGTTCAG TTCTTGATTGAAGGTCTTTTTGCCATAAGAAAAGCAAAATTCCAGGGCTATCCTGCTGTCCGTCCAGAGTTGGATCTGGTGGAACAAGAAGAGCAAATCA CACATGAGCTATCCCTCGAGGAAACGATAGATTCAGAGATATCTCTCGATTTCGAAGAAGCTGGTCACAAACTTTTGAAGATTAAGCTCGAACCAGGTCA AGAGATGGAGTTGTGCATCATGCTTCTGGAGTGCTGCAGTCAAGAGAGGACATACCTTAGGTACTATGGTCTTCTGGGGCAGAGGTTCTGCATGATCAAC AAAATCCACCAAGAAAATTTCGAGAAGTGTTTCGTGCAGCAGTACTCGATGATTCACAGGCTCGAGACAAACAAGCTGCGGAATGTAGCAAAGTTCTTCG CCCATTTGCTAGGCACAGATGCACTTCCTTGGCATGTTCTGGCCTACATACGTTTGACTGAGGAGGACACCACTTCTTCTTCTCGTATTTTTATCAAGAT CCTATTCCAGGAATTATCAGAACACCTGGGTATCCGAAACCTGAACGATCGTCTCTCGGATCCGGGAATGCAAGACTCGTTCGAGTCCATTTTCCCGAGG GACAATCCGAAGAACACGAGGTTCTCCATCAACTTCTTCACCTCTATTGGTCTCGGTGGAATCACCGAGAACCTACGAGAGTATCTGAAGAACATGCCGC GGCTGATTATGCAGCAGCAGAAGCCTGCCTCGGACTCGGACTCTGAGTCTGAATCTGAAGACAAATCAGACTCCGATTCCTCTGACTCGTCATCAGAATC GGAATCGGAAAGCTCCTCATCCGAAGAAGACAGACGTTCGAAACGGAAGAAAATGAATGGAAGGGACGATCGAGATCGAAGACACAGTAAGAAGAGTCGG AGAGATTGA
AA sequence Show only first row Show all	>Lus10003392 pacid=23175224 polypeptide=Lus10003392 locus=Lus10003392.g ID=Lus10003392.BGIv1.0 annot-version=v1.0 MARKYSSDSSDDDGDRHRRSSRKDLELDSSSDSDGKTKIDRKDERRNEDRRRKEVQESSDEEGELVEREDGDRRGKEKNSSARDGNKIADEEGDRRDSSD KDRSRSRRHDDYRGRYRHSRRDADRRADRHRDRDYDDRDRRHRTRDDEGGDKHRRDRDRDSRRDESRNEKVKEEAKPELAAPDVNSIPAAWSSGKSGGVY IPPFKLARMMKEVDDKSSVEYQRLTWDALRKSINGLVNKVNAANIKNIIPELFSENLIRGRGLFCRSCMKSQMASPGFTDVFAALAAVVNTKFPEVGELL LKRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAVLLANPTDDSVEVAVGFVIESGSMLQDLSPKGLHGAFERFRAILHEGEIDKRVQ FLIEGLFAIRKAKFQGYPAVRPELDLVEQEEQITHELSLEETIDSEISLDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMIN KIHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRNLNDRLSDPGMQDSFESIFPR DNPKNTRFSINFFTSIGLGGITENLREYLKNMPRLIMQQQKPASDSDSESESEDKSDSDSSDSSSESESESSSSEEDRRSKRKKMNGRDDRDRRHSKKSR RD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	0	1
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	4.2	0.8888
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10020324 [exp]	4.5	0.8755
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	5.8	0.8805
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Lus10037100 [exp]	9.1	0.7910
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	9.9	0.8636
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	11.0	0.8164
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	11.1	0.8772
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	17.4	0.8194
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	22.3	0.8563
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	23.5	0.7888

Compare expression of checked genes

Lus10003392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.