Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51780 171 / 2e-52 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G52060 102 / 1e-25 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 87 / 4e-20 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 86 / 8e-20 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G40630 51 / 7e-08 Ubiquitin-like superfamily protein (.1) AT5G14360 50 / 2e-07 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002209 [exp] 360 / 4e-126 AT3G51780 149 / 6e-43 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 250 / 8e-83 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10005051 [exp] 249 / 3e-81 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027420 [exp] 106 / 5e-27 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 102 / 3e-26 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10038882 [exp] 96 / 4e-23 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 93 / 4e-22 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 90 / 7e-21 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 77 / 1e-16 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121200 [exp] 175 / 3e-54 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.001G279500 [exp] 168 / 2e-51 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 163 / 2e-49 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.012G133400 [exp] 107 / 3e-27 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.015G135500 [exp] 103 / 1e-25 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 100 / 3e-25 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G110300 [exp] 85 / 5e-19 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 80 / 2e-17 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G339100 [exp] 50 / 2e-07 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10003393 pacid=23175206 polypeptide=Lus10003393 locus=Lus10003393.g ID=Lus10003393.BGIv1.0 annot-version=v1.0 ATGATGACAGCGATGGCTCATCAGAATGAGGAGACGGAGTTGGAAGTGAGGCCTGGGGGAATGCTGGTACAAAGACGAGACGGCGATGATCGGCATCGCA CTCACGGCGGGGGTTCTACTACAAACGTAATTAATGGAGCTCGAGCTCAGCACGATGTCCATATCCCTGCGCAATCTACTCTCGGCGAGTTGAAGAGGAT CAATGAGCGCGACACAGGTCTGGAATGTGCTAGTAGGCACAAGATGTCATTCCGAGGAAAGGCGAAAGATGATGCTGAGCATGTGCACGATGCAGCCAAG GAAAGAGAGGACGCATCAACAAAGCTGGATGTTAAGCAAATAGCTGAAATCTTGAAGGCAATGCAAGCTATTGATGAAGTTAGAACCAAAGTCGATAAGC TCTCTGAAAGAGTCCATGCGCTTAAAGTTGCTGTTAATGGTGGAACGAAGGTGGCTGACCGGGAATTCGCAGTTGCAGCTGAGTTACTGATGAGGCAGTT ACTGAAATTGGATACGATTGATGCCATAGGAGAAGCTAGGATTCAGCGGAAGGCTGAGGTGCTCAGAGTCCAGAAGTTGCACGCTTCGTTGGACGATCTG AAGGCGAGGAATGGCAAGCCAGCAGATACAGGCTTTGTTGTCCCAACCGTGACGACCAACTGGGAAAAGTTTGACTCAGGAATGGGAAGCTTGACTCCTC CACCTCCAGTGACTTCTTCAGCTACAATCACTCAGAACTAG
AA sequence Show only first row Show all	>Lus10003393 pacid=23175206 polypeptide=Lus10003393 locus=Lus10003393.g ID=Lus10003393.BGIv1.0 annot-version=v1.0 MMTAMAHQNEETELEVRPGGMLVQRRDGDDRHRTHGGGSTTNVINGARAQHDVHIPAQSTLGELKRINERDTGLECASRHKMSFRGKAKDDAEHVHDAAK EREDASTKLDVKQIAEILKAMQAIDEVRTKVDKLSERVHALKVAVNGGTKVADREFAVAAELLMRQLLKLDTIDAIGEARIQRKAEVLRVQKLHASLDDL KARNGKPADTGFVVPTVTTNWEKFDSGMGSLTPPPPVTSSATITQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	0	1
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	2.0	0.9029
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	2.0	0.8880
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	6.2	0.8861
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	8.9	0.8624
					Lus10022149 [exp]	9.2	0.7829
					Lus10030178 [exp]	9.9	0.8164
AT1G06470			Nucleotide/sugar transporter f...		Lus10031370 [exp]	11.0	0.8265
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	14.5	0.8544
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	15.5	0.8736
AT5G42710			unknown protein		Lus10010806 [exp]	15.8	0.8698

Compare expression of checked genes

Lus10003393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.