Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 176 / 6e-55 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002208 [exp] 202 / 5e-64 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 136 / 2e-38 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 104 / 7e-27 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 104 / 8e-27 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 102 / 6e-26 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 102 / 6e-26 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 96 / 8e-24 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 94 / 5e-23 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 90 / 1e-21 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102800 [exp] 234 / 3e-76 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 227 / 3e-73 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 143 / 5e-41 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 143 / 5e-41 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 140 / 3e-40 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 140 / 4e-40 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 98 / 2e-24 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 96 / 9e-24 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 93 / 8e-23 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 92 / 2e-22 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10003394 pacid=23175203 polypeptide=Lus10003394 locus=Lus10003394.g ID=Lus10003394.BGIv1.0 annot-version=v1.0 ATGAACGCTTGCCCTCAAGCTAACGAGGTGGACGACACCTTAGGCGCGTTCCACACCCACGCAGTAGCAGGACTCCTAGGCGGCCTGCTAACAGGGCTAC TCGCCGAGCCGGACCTCTGCGAGCTAATTCTTCCGGTGAAAACCAGAGGCGCGTTCTACGGCGGGAACGGCGGAGTGCAGTTCCTGAAGCAGATCGCCGC CGCACTGTTCGTGATAGGTTGGAACGTGGTGTCGACTACCTTGATACTTCTGTTCATAAGGCTGTTCATGCCTCTGAGGATGCCGGAGGAGCAGCTGGCG ATCGGAGACGACGCCGTCCACGGCGAGGAAGCCTACGCTCTTTGGGGAGACGGCGAGAAGTTTGATCCGACGAAGCATGGCTGGAATACGCCTAACTATG CTGAGGACATTGCGCCGTCTCCTTATATCAATGGTGCTAGAGGGGTTACGATTAATTTGTGA
AA sequence Show only first row Show all	>Lus10003394 pacid=23175203 polypeptide=Lus10003394 locus=Lus10003394.g ID=Lus10003394.BGIv1.0 annot-version=v1.0 MNACPQANEVDDTLGAFHTHAVAGLLGGLLTGLLAEPDLCELILPVKTRGAFYGGNGGVQFLKQIAAALFVIGWNVVSTTLILLFIRLFMPLRMPEEQLA IGDDAVHGEEAYALWGDGEKFDPTKHGWNTPNYAEDIAPSPYINGARGVTINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	0	1
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10023323 [exp]	1.4	0.7925
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	2.0	0.8080
AT4G25330			unknown protein		Lus10012314 [exp]	4.0	0.7287
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024352 [exp]	8.5	0.7366
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	8.7	0.7164
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	10.1	0.7558
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	11.0	0.7464
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	12.4	0.7125
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	16.7	0.7487
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	19.1	0.7296

Compare expression of checked genes

Lus10003394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.