Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 117 / 2e-29 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G46430 111 / 2e-27 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT4G01010 106 / 1e-25 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G46440 106 / 1e-25 ATCNGC11 CYCLIC NUCLEOTIDE-GATED CHANNEL 11, cyclic nucleotide-gated channels (.1) AT2G46450 106 / 1e-25 ATCNGC12 cyclic nucleotide-gated channel 12 (.1.2.3) AT1G19780 105 / 2e-25 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G01340 105 / 3e-25 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT1G15990 103 / 2e-24 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G23980 100 / 2e-23 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 99 / 3e-23 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003395 [exp] 227 / 2e-67 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10019014 [exp] 221 / 2e-65 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038308 [exp] 167 / 1e-47 AT5G53130 446 / 7e-149 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 106 / 1e-25 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 103 / 8e-25 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10041662 [exp] 103 / 1e-24 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 103 / 1e-24 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10037394 [exp] 95 / 1e-21 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10041319 [exp] 94 / 1e-21 AT2G28260 800 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170000 [exp] 117 / 2e-29 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.012G002200 [exp] 116 / 4e-29 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 114 / 3e-28 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.015G019100 [exp] 109 / 1e-26 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.003G183000 [exp] 97 / 1e-22 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 96 / 4e-22 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 95 / 1e-21 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.013G108200 [exp] 92 / 7e-21 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.018G009200 [exp] 91 / 2e-20 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.018G097600 [exp] 89 / 7e-20 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Lus10003396 pacid=23175209 polypeptide=Lus10003396 locus=Lus10003396.g ID=Lus10003396.BGIv1.0 annot-version=v1.0 ATGAGGATCTTCAACCCGAAGGAATCGCTGCTGGTTCAGAGATGGAACTTGATATTGCTGATAATAAGTGCAGCTGCAGTGCAGATAGATCCTCTATTTC TTTACTTGCTACGAATCAACAACTCTCGCACTAGTCCTGGTACTAATATGATTGAGTTGGACTTAGCTTTGGTGATTTCTGCAGCCACACTCCGCTCCAT TGCTGACGTGTTCTGCGGCCTGCTGCGCGTGTTTTTCAAATTCCGGGCAGCTTTTCTTGACAGCGTATCCGCAACTGATCGCAGATACTTCCTTTCCTTC CTCGTCGTCGACTTTCTTGCCCTCCTTCCCTCCCTTCAGATGATTCAATCAGACGGTAGAGAGTGGCCAATAATGATCTTACGGTTGTTGAGAAAACGTC CAAAAAAATTGAAGTCCTGTAGAAATCATGCTGGATGTGATTACATTACAATGTTGACCAATGGCAATCCTGGGATGGATTACTGGTCTTTTGTGAATCG GACTTGTCCTAAACGAGGCACGGAATCGAGTTTTGAATACGGGATGTTTGCTGATGCTGCTAAGTCTGGCATCCTGGAATCTACAAGTTTCGGCGAGAAG TTTTTCTACAGCTTTTGGTGGGGTCTGCAAAGTCTGAGCACCTTGGGTCAGAACGTAACACCAAGCATCAACAGTCTGGAGATAGGTTTTGCAGTGTGCA TTTTCATAGCCGGGTTGCTGTTATTTTCGCAAGTTATCGCAATCATACAGACAAGGATGCTGGCATCGACAGTTAGGATGGAGGGGATGAAAGTGAAATT AGAAGATCTGGAGAAATGGATGTTATTGAATTTATGA
AA sequence Show only first row Show all	>Lus10003396 pacid=23175209 polypeptide=Lus10003396 locus=Lus10003396.g ID=Lus10003396.BGIv1.0 annot-version=v1.0 MRIFNPKESLLVQRWNLILLIISAAAVQIDPLFLYLLRINNSRTSPGTNMIELDLALVISAATLRSIADVFCGLLRVFFKFRAAFLDSVSATDRRYFLSF LVVDFLALLPSLQMIQSDGREWPIMILRLLRKRPKKLKSCRNHAGCDYITMLTNGNPGMDYWSFVNRTCPKRGTESSFEYGMFADAAKSGILESTSFGEK FFYSFWWGLQSLSTLGQNVTPSINSLEIGFAVCIFIAGLLLFSQVIAIIQTRMLASTVRMEGMKVKLEDLEKWMLLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	0	1
AT1G45160			Protein kinase superfamily pro...		Lus10005470 [exp]	2.4	0.9675
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10008557 [exp]	8.2	0.8960
					Lus10039892 [exp]	10.4	0.9508
AT5G40690			unknown protein		Lus10025381 [exp]	10.5	0.8009
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	11.1	0.9168
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10006824 [exp]	11.4	0.9049
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10006825 [exp]	11.5	0.9007
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	13.4	0.9461
					Lus10032968 [exp]	15.6	0.9436
AT5G36930			Disease resistance protein (TI...		Lus10007812 [exp]	17.2	0.8780

Compare expression of checked genes

Lus10003396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.