Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 202 / 2e-61 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT4G30560 200 / 1e-60 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 200 / 3e-60 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G01340 194 / 2e-58 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 192 / 8e-58 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G19780 191 / 9e-57 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 190 / 1e-56 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G28260 186 / 2e-55 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT2G46430 185 / 8e-55 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT1G15990 183 / 4e-54 ATCNGC7 cyclic nucleotide gated channel 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 222 / 4e-67 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 207 / 6e-62 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 202 / 1e-61 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 197 / 7e-59 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 195 / 3e-58 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 194 / 6e-58 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 186 / 4e-55 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10038815 [exp] 182 / 5e-54 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10042132 [exp] 181 / 2e-53 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019100 [exp] 219 / 1e-67 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 217 / 1e-66 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 199 / 3e-60 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 198 / 1e-59 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 192 / 1e-57 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 191 / 6e-57 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.002G170000 [exp] 189 / 1e-56 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.009G010700 [exp] 181 / 1e-53 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.006G271480 [exp] 169 / 7e-52 AT2G24610 493 / 2e-171 cyclic nucleotide-gated channel 14 (.1) Potri.017G067000 [exp] 172 / 4e-50 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003397 pacid=23175201 polypeptide=Lus10003397 locus=Lus10003397.g ID=Lus10003397.BGIv1.0 annot-version=v1.0 ATGGACGAGCAGGTGCTAGATGCAATGTGTGCCCGTCTGAAACCAGCACTATACACGAAGAAAAGCTACATTGTTCGAGAAGACGATCCAGTTGAGGAGA TGCTCTTCATAATGAGTGGGGAGCTAGAGTCTGTGTCCACAAACGGTGGAACACAAAGCTTTTACAACGTTCAGAATCTGAAATCTGGTGACTTCTGCGG CGAGGAGCTTCTGACGTATGTTATGACTCCCGACCCTCTGCCAATCCTTCTTTTCTCTCCCAGAACTGTTCAAGCCGTTACAGAAGTCCAAGCATTTGCA ATATCCGCCGATGACTTGAACCACGTGGCTTCTAAGTTCAGTAGTCAGCTTAATACCCAGCAGTTCCGCAACACATTCAGGTATTATTCCCAGCAGTGGA CGACATGGGCTGTTCGTTTCATACAAGCTACTTGGCGACAATCCAAAAACAAAAAGCTCGAGGAAGAAGCAATGAGGCTAGGTGGGGATCCTCCTACCAG TCTTGCTGTTGCCATATGCGCCTCGAGGTTTGCTGCCAATGCACTACAGCTCATGAGCAGGCGCATCTCCGCGCAAAATGCTAGGATTTCGTAA
AA sequence Show only first row Show all	>Lus10003397 pacid=23175201 polypeptide=Lus10003397 locus=Lus10003397.g ID=Lus10003397.BGIv1.0 annot-version=v1.0 MDEQVLDAMCARLKPALYTKKSYIVREDDPVEEMLFIMSGELESVSTNGGTQSFYNVQNLKSGDFCGEELLTYVMTPDPLPILLFSPRTVQAVTEVQAFA ISADDLNHVASKFSSQLNTQQFRNTFRYYSQQWTTWAVRFIQATWRQSKNKKLEEEAMRLGGDPPTSLAVAICASRFAANALQLMSRRISAQNARIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003397 [exp]	0	1
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	11.8	0.7048
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10013276 [exp]	13.0	0.6374
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	15.8	0.6521
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	41.2	0.6498
					Lus10039892 [exp]	41.9	0.6512
					Lus10032841 [exp]	51.8	0.6484
AT3G08890			Protein of unknown function, D...		Lus10012498 [exp]	52.9	0.6432
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	59.3	0.6227
AT4G18060			SH3 domain-containing protein ...		Lus10025372 [exp]	60.5	0.6245
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	67.1	0.6281

Compare expression of checked genes

Lus10003397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.