Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53120 564 / 0 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT1G23820 415 / 9e-145 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 402 / 2e-140 SPDS2 spermidine synthase 2 (.1) AT5G19530 108 / 2e-26 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G04610 42 / 0.0007 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019016 [exp] 706 / 0 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10029169 [exp] 413 / 2e-144 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 410 / 8e-144 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 403 / 3e-141 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10012996 [exp] 395 / 6e-137 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 385 / 2e-133 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10018259 [exp] 322 / 3e-109 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 147 / 6e-42 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10010538 [exp] 115 / 5e-29 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002600 [exp] 592 / 0 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 568 / 0 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G094600 [exp] 416 / 8e-146 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 409 / 4e-143 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G089200 [exp] 104 / 6e-25 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 98 / 7e-23 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 97 / 2e-22 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10003398 pacid=23175219 polypeptide=Lus10003398 locus=Lus10003398.g ID=Lus10003398.BGIv1.0 annot-version=v1.0 ATGGGGGGAGACGCAGGAAGAGATTTGGGATGCCAGAAGATTATGGATGGGAAGGCGAGTAATGGAAATGGAAACGGCTCAGAGAAGGCTATTCCTTCCT GTTGTCAGAAAGCCGTGGCCTTTGCTACAGACCTTGGTCCAAAATGCCACTCCACTGTTGTTTCTGGTTGGTTCTCTGAATCCCAATCAGGCAAAGCTGG GAAAAAAGTTGTTTACTTTAACAATCCTATGTGGCCTGGAGAAGCTCACTCTTTGGAAGTGGAGGAAATTCTGTTCGAGGGGAAGTCCGAATACCAAGAG GTTTTGGTTTTTCAGTCGACCTTTTACGGTAAAGTGCTTGTTCTCGATGGCATTGTTCAACTGACCGAGAAAGACGAATGTGCATACCAGGAAATGATAG CTCATCTTCCACTCTGTTCGATTCCATCCCCAAAAGCAGTCCTGGTAGTTGGGGGTGGTGATGGAGGTGTCCTGAGGGAAATCTCTCGTCACAGTTCAGT GGAGACGATCGACATATGTGAAATAGATAGGATGGTTATAGATGTGAGTAAGAAGTTTTTCCCCGAGTTAGCTGTCGGATTCGAGGATCCACGTGTCCAT CTCCACGTTGGTGATGCTGTGGAATTTCTCCAGCGTTCTCCTAGAGGAAAGTATGATGCCATTATTGTTGACTCTTCGGATCCTGTCGGCCCGGCCCAGG AGCTTGTAGAGAAGCCGTTTTTCGACACAATAGCTACAGCACTGAGGCCTGGCGGGATCCTCTGCAACATGGCCGAGAGTATGTGGCTTCACACCCATCT GATTGAGGATATGATATCGATCTGTCGAGAGACTTTCATGGGTTCTGTTCACTATGCTTGGGCTAGTGTTCCAACCTATCCAAGTGGGGTGATTGGATTT GTGCTGTGTTCGACGGAAGGGCCTGCTGTTGACTTCTTGAACCCGGTCAACCCGATCGAGGAGTTGGAAGGAGCTGGGAAGCATAAGAGGGAGCTTAGGT TCTATAACTCGGAGATGCATAGAGCTGCATTTGCTTTGCCAAACTTCTTGAGAAGGGAGGTGAGCTTGTTTCGCAATGCTTCGGCCAAAGAAATATCCTC CTAA
AA sequence Show only first row Show all	>Lus10003398 pacid=23175219 polypeptide=Lus10003398 locus=Lus10003398.g ID=Lus10003398.BGIv1.0 annot-version=v1.0 MGGDAGRDLGCQKIMDGKASNGNGNGSEKAIPSCCQKAVAFATDLGPKCHSTVVSGWFSESQSGKAGKKVVYFNNPMWPGEAHSLEVEEILFEGKSEYQE VLVFQSTFYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKAVLVVGGGDGGVLREISRHSSVETIDICEIDRMVIDVSKKFFPELAVGFEDPRVH LHVGDAVEFLQRSPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIATALRPGGILCNMAESMWLHTHLIEDMISICRETFMGSVHYAWASVPTYPSGVIGF VLCSTEGPAVDFLNPVNPIEELEGAGKHKRELRFYNSEMHRAAFALPNFLRREVSLFRNASAKEISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	0	1
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10014118 [exp]	3.5	0.8507
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	5.2	0.8717
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	5.3	0.8603
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	8.4	0.8689
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	9.2	0.8470
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	10.4	0.8594
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	10.4	0.8456
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	14.3	0.8457
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	15.7	0.8452
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10039617 [exp]	18.7	0.8336

Compare expression of checked genes

Lus10003398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.