Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29380 203 / 2e-63 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 202 / 8e-63 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT4G26080 200 / 2e-61 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07430 199 / 5e-61 HAI2 highly ABA-induced PP2C gene 2 (.1) AT5G59220 194 / 1e-59 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G57050 187 / 3e-57 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 179 / 7e-53 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 178 / 2e-52 HAB2 homology to ABI2 (.1) AT5G51760 168 / 2e-49 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G67820 128 / 4e-34 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019017 [exp] 337 / 6e-116 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10040738 [exp] 206 / 2e-63 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 202 / 3e-62 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10004703 [exp] 200 / 9e-62 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 197 / 1e-60 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10012962 [exp] 186 / 2e-56 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10026447 [exp] 175 / 6e-51 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 174 / 2e-50 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10034965 [exp] 157 / 8e-46 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002700 [exp] 261 / 5e-86 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.015G018800 [exp] 253 / 4e-83 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.001G092100 [exp] 224 / 1e-71 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 205 / 6e-64 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.008G059200 [exp] 204 / 2e-63 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 193 / 7e-59 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.006G164632 [exp] 190 / 3e-58 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.001G245200 [exp] 191 / 5e-58 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.012G131800 [exp] 180 / 3e-54 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 182 / 8e-54 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10003399 pacid=23175228 polypeptide=Lus10003399 locus=Lus10003399.g ID=Lus10003399.BGIv1.0 annot-version=v1.0 ATGGAGGATGCGGTTAGCGTGGAGCTGGGGTTGTTGCCGTCGGGTGAGTACGATTTCTTCGGGGTGTACGACGGTAACGGAGGTGTGCGCGTGGCCGACG CGTGTAGGTTGCATAAGACGGTGGCGGAGGAGATTATGGCGGCGGCGGCGGGAGGAGAGAAGATGGAGTATTGGGGAGGGGTGATGGAGAGGAGTTTCGG GAAGGTGGATGATACGGTGGAGGAATACGGGATGATGGGATCGACGGCGGTGGTGGCTGTGGTCGGTAAAGAGGAAGTGGTTGTCGGGAATTGTGGGGAT TCGAGAGCTGTTCTTTGTAGAAAGGGAGTTGCGGTTCCTTTGTCGGTGGATCACAAGCCTGACAGGCCGGACGAGCTGGAAAGAGTTGAAGCCGCCGGCG GGCGTGTCATCAACTGGAACGGTCCACGTGTCCTCGGCGTTCTCTCCACTTCCAGATCTATAGGTGACCAGTATCTGAAACCATACATAATACCGACGCC AGAAGTGGTTGTACACAAGAGAAGCAAAGAAGACGACTTCCTGATACTAGCCAGCGACGGCCTGTGGGACGTCATCACCAACGAGGTGGCGTGCCAGGTG GCGGCCAAATGCCTACGTGGCCGAATGAGGCGACGGGGTTCGTCTCCGGAGGTGGTCCGTGCTGCTGAGGCGGCGGCAGTGCTGGCTGAGCTGGCAATGG CACAGGGCAGCACTGATAACATAAGTGTCATCGTCGTGGAGCTTAACACTCGTACTACTAATACTAGTAGTAGTAGTAGTAGTAATATTGGGTCGTCAAA GGTAATTGGCTAG
AA sequence Show only first row Show all	>Lus10003399 pacid=23175228 polypeptide=Lus10003399 locus=Lus10003399.g ID=Lus10003399.BGIv1.0 annot-version=v1.0 MEDAVSVELGLLPSGEYDFFGVYDGNGGVRVADACRLHKTVAEEIMAAAAGGEKMEYWGGVMERSFGKVDDTVEEYGMMGSTAVVAVVGKEEVVVGNCGD SRAVLCRKGVAVPLSVDHKPDRPDELERVEAAGGRVINWNGPRVLGVLSTSRSIGDQYLKPYIIPTPEVVVHKRSKEDDFLILASDGLWDVITNEVACQV AAKCLRGRMRRRGSSPEVVRAAEAAAVLAELAMAQGSTDNISVIVVELNTRTTNTSSSSSSNIGSSKVIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	0	1
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	1.0	0.9703
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10007905 [exp]	2.4	0.9461
AT5G67020			unknown protein		Lus10019344 [exp]	2.4	0.9516
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	2.8	0.9387
AT1G44414			unknown protein		Lus10025672 [exp]	3.2	0.9325
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	4.0	0.9342
AT5G62140			unknown protein		Lus10015008 [exp]	4.2	0.9328
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	4.6	0.9353
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	5.0	0.9363
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	7.3	0.9353

Compare expression of checked genes

Lus10003399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.