Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) AT2G25409 116 / 1e-33 unknown protein AT2G46495 115 / 1e-31 RING/U-box superfamily protein (.1) AT5G07040 109 / 4e-31 RING/U-box superfamily protein (.1) AT2G25410 114 / 7e-31 RING/U-box superfamily protein (.1) AT1G28040 101 / 2e-26 RING/U-box superfamily protein (.1) AT2G46493 98 / 3e-26 RING/U-box superfamily protein (.1) AT2G46494 94 / 3e-23 RING/U-box superfamily protein (.1) AT2G35910 90 / 5e-23 RING/U-box superfamily protein (.1) AT2G46160 83 / 3e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019018 [exp] 270 / 4e-91 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10032382 [exp] 136 / 4e-39 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10023086 [exp] 132 / 3e-37 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10024124 [exp] 117 / 5e-34 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10005389 [exp] 115 / 2e-33 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10012628 [exp] 110 / 3e-29 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10041079 [exp] 77 / 5e-18 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10041134 [exp] 78 / 2e-17 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10031515 [exp] 77 / 2e-17 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017800 [exp] 152 / 2e-45 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 151 / 4e-45 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 133 / 4e-38 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 130 / 5e-37 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 119 / 2e-34 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 122 / 4e-34 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 121 / 1e-33 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 115 / 4e-33 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 98 / 2e-26 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 93 / 2e-24 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10003400 pacid=23175215 polypeptide=Lus10003400 locus=Lus10003400.g ID=Lus10003400.BGIv1.0 annot-version=v1.0 ATGCCAACAGCTGTTCGTTACGCTATAACAGTAGGTGTGGGAATCCCACTCCTACTATTCGGTGTAGGCGCCTTATGTTGCGTGTTTCGAAGAGTCAAAC GATGTGTCACCTCATCATCCACCAATGACCACCACCAACACCACCGGTCTCTTCCACAATTCAATCGTGACACAATCACCATTCCGCCAACTCGAACCGG TCTAGACGGATCGACAATCAAATCGTACCCGAAAATAGTGTTGGGAGAGAGTAGGAGGTTACCGAAGCCGGACGACGACAACACATGTTCCATTTGCCTG TCGGATTACAACCCTAAAGAAACCGTCAAAACCATACCGGATTGCCATCACTGCTTCCATGCCGAGTGTATCGACGAGTGGCTTCGACTCAACGGGACCT GCCCCATCTGCCGCAGTTCTCCGTCCCCTGGCATCGTCATAGCTACATAG
AA sequence Show only first row Show all	>Lus10003400 pacid=23175215 polypeptide=Lus10003400 locus=Lus10003400.g ID=Lus10003400.BGIv1.0 annot-version=v1.0 MPTAVRYAITVGVGIPLLLFGVGALCCVFRRVKRCVTSSSTNDHHQHHRSLPQFNRDTITIPPTRTGLDGSTIKSYPKIVLGESRRLPKPDDDNTCSICL SDYNPKETVKTIPDCHHCFHAECIDEWLRLNGTCPICRSSPSPGIVIAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10003400 [exp]	0	1
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10029434 [exp]	8.2	0.6562
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10041174 [exp]	11.9	0.6930
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	21.7	0.6630
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	44.1	0.6368
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	97.7	0.5797
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Lus10025278 [exp]	150.8	0.5531

Compare expression of checked genes

Lus10003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.