Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 182 / 3e-55 RING/U-box superfamily protein (.1) AT2G46495 116 / 3e-30 RING/U-box superfamily protein (.1) AT2G25410 112 / 1e-28 RING/U-box superfamily protein (.1) AT2G46494 107 / 1e-26 RING/U-box superfamily protein (.1) AT5G36001 94 / 8e-23 RING/U-box superfamily protein (.1.2) AT1G28040 62 / 5e-11 RING/U-box superfamily protein (.1) AT1G18390 47 / 1e-05 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019018 [exp] 388 / 3e-135 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 137 / 2e-37 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10023086 [exp] 100 / 1e-23 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 97 / 9e-23 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10014923 [exp] 96 / 3e-22 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10010123 [exp] 78 / 3e-17 AT5G53110 114 / 1e-30 RING/U-box superfamily protein (.1) Lus10025553 [exp] 71 / 1e-13 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025491 [exp] 62 / 1e-10 AT5G53110 80 / 2e-16 RING/U-box superfamily protein (.1) Lus10007845 [exp] 57 / 3e-09 AT5G53110 79 / 9e-17 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017800 [exp] 218 / 7e-69 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 206 / 2e-64 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 157 / 1e-45 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 157 / 2e-45 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.001G154500 [exp] 107 / 2e-27 AT2G25410 121 / 5e-32 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 103 / 9e-25 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.003G139900 [exp] 100 / 5e-24 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 98 / 2e-23 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.007G125600 [exp] 99 / 3e-23 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.007G125900 [exp] 98 / 6e-23 AT1G66920 0 / 1 Protein kinase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003401 pacid=23175202 polypeptide=Lus10003401 locus=Lus10003401.g ID=Lus10003401.BGIv1.0 annot-version=v1.0 ATGACCAATTCCATCCTTCTTCTTCTTCCTCTTCTCATCATTCTCTTCTCCATCTCACCAACAATCTTCACTCCCACAACTGCCCAATCATCATCATGCT TCACATCCTCCTGCGGCCATAACGAGCCAAAAATCCGGTTCCCTTTCCGGATCCAAAGCCGCCAGCCCAACCGGTGCGGCTACCCGGGTTTCACCCTCTC CTGTGGTCCCTACAACGAAACCCTCATCTCCTTCCCCGAAACCACGCCGTTTATCCTCCGTGCCATTGACTATTCCACGCAACAGCTCTGGGTCAACGAC CCGGCAAACTGCCTCGCCGCCCGGCTCCTCTCTCACGACCTCTCCGCAGCTTCCGCCGACGTCGGTGGCGAATCCTCGCCGTTCCGAGGACTCTACGAGC AGCCTTTTTCATTCTTCAACTGTTCCGGGAGTAATTACTCCGGGTTCGGTGGGATGAACCCCATCGCCTGCCTCAGCAGCAGCCGCGGCGGAGGAGGGGG AGAGGGGTTGGTGGTGGGGTACTCGGTGTTTGCGACGTCGTCGGAGAGGGCGATGGTGAGGTTGAGGCGTGAGGCTTCGTGTGAGATGGTGGCGACGGTT AAGGTGCCGATGGAATGGCCGTTCTACAAGCAGGTGACGTCGTCGGATCTTAGCGAGGATGTGCGGCTGACGTGGAACTCGCCGGAGTGCCGTCGGTGCG AGATGAGGGGCGGAACGTGTGGGTTGAAGGGGAACTCGTCTCGTGATGTTGGCTGTTCTCACATTCCTCACCGCGCACGAAGCTCTGCCGTCGAGCAACT TCTTGTAATCATGAGCGAAGTGCATAAATACAATACATATGGCCAGTGA
AA sequence Show only first row Show all	>Lus10003401 pacid=23175202 polypeptide=Lus10003401 locus=Lus10003401.g ID=Lus10003401.BGIv1.0 annot-version=v1.0 MTNSILLLLPLLIILFSISPTIFTPTTAQSSSCFTSSCGHNEPKIRFPFRIQSRQPNRCGYPGFTLSCGPYNETLISFPETTPFILRAIDYSTQQLWVND PANCLAARLLSHDLSAASADVGGESSPFRGLYEQPFSFFNCSGSNYSGFGGMNPIACLSSSRGGGGGEGLVVGYSVFATSSERAMVRLRREASCEMVATV KVPMEWPFYKQVTSSDLSEDVRLTWNSPECRRCEMRGGTCGLKGNSSRDVGCSHIPHRARSSAVEQLLVIMSEVHKYNTYGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	5.5	0.7471
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10032941 [exp]	8.3	0.6626
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	11.2	0.6480
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	15.2	0.6840
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014002 [exp]	17.2	0.6562
					Lus10012416 [exp]	18.2	0.6293
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	18.7	0.6353
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	23.9	0.5879
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	32.7	0.5887
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	36.3	0.5805

Compare expression of checked genes

Lus10003401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.