Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33520 113 / 4e-31 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 49 / 6e-07 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036161 [exp] 189 / 3e-61 AT4G33520 122 / 2e-34 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10023777 [exp] 113 / 3e-29 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 48 / 2e-06 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205400 [exp] 116 / 3e-30 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 104 / 5e-26 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 53 / 3e-08 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10003403 pacid=23169614 polypeptide=Lus10003403 locus=Lus10003403.g ID=Lus10003403.BGIv1.0 annot-version=v1.0 ATGTGCAGCACGCGGCGTACTGTAGGATGTGCGGTGCGTCCGTCCTACGATATGTTGCGTGGCGCACCCAAATCTGGTTTCCTTTCAGCTGCTAGTGAAC TTCCTGGGAAGCGGGTAGCCTTATCCTTGTTACATCGCCGCTGTTTTCATATATCGGCGGAATCTGGCGGAGGTGGTGGTGGTGATGAGGGCGGCGACGG CGGAGGATCAGACGGTGGAGATGTGAAGCCTGGTGGTGGAGTGGAGGAGGGCTGCGCATTGTCGTCGGATGTTATCATACTTAATGTTGTATTAGCCTTT GGCGATGTCCATTTGTTGGTGGAGCAGCGGATGTCATGTGGAGGATGTGTAGCCAGCGTCAAGAAGATACTGGAAAGCCAACCACAAGTATCTTGTGCAA GTGTGGATCTTTTAACAGAGACAGCAACAGTGTGGGCTGTCTCTGGAGCAAAAGCAGTACCGGACTGGGAAAAGCAACTTGGTGATGCACTTGCTAAGCA CCTCACTACGTGTGGTTTCACATCAAATCCTCGAGGTGCTCGGAAAACTGTTGGAGGAGATGCTTAG
AA sequence Show only first row Show all	>Lus10003403 pacid=23169614 polypeptide=Lus10003403 locus=Lus10003403.g ID=Lus10003403.BGIv1.0 annot-version=v1.0 MCSTRRTVGCAVRPSYDMLRGAPKSGFLSAASELPGKRVALSLLHRRCFHISAESGGGGGGDEGGDGGGSDGGDVKPGGGVEEGCALSSDVIILNVVLAF GDVHLLVEQRMSCGGCVASVKKILESQPQVSCASVDLLTETATVWAVSGAKAVPDWEKQLGDALAKHLTTCGFTSNPRGARKTVGGDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10003403 [exp]	0	1
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	4.4	0.8581
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	6.0	0.7777
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	16.1	0.8218
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	16.2	0.7944
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	20.2	0.7551
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	20.5	0.8053
AT4G01995			unknown protein		Lus10012004 [exp]	31.7	0.7492
					Lus10002266 [exp]	33.2	0.7916
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10002145 [exp]	36.5	0.7447
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	37.5	0.7458

Compare expression of checked genes

Lus10003403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.