Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017320 [exp] 320 / 4e-105 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 310 / 1e-102 ND 40 / 0.004 Lus10002926 [exp] 315 / 4e-99 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10042209 [exp] 61 / 8e-11 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10008606 [exp] 59 / 4e-10 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003404 pacid=23169617 polypeptide=Lus10003404 locus=Lus10003404.g ID=Lus10003404.BGIv1.0 annot-version=v1.0 ATGGTGAGGGTGGCTTCTTCTTCAAGTGAGCAACACACTCTTCCTGGATCACCGAATGCTGGAATCCCAAGTACGTCTCTGGTATCTAGCCCCCCTAAAG TTCAGCAAGCATGTCATACACTCGGATCATGTGCCGCCAAGTTACAAGCAACTGTGATTGATCCTCTTCCCAATGCTCTACAGGTCTTTGAGTCATTGAG TGCTAAAGCACCATCCAACGTGGATAGACCAGTTGGAAACTGGGACGAGGGAAATGTGGATGTTCTTCACTCATCTTCTAATGCTAGTGTGCCCGAACCC TCCGCTCAGCAGGGTCGTCAATGCTTTCAGACTGGCCAGAGCAGTAAAGTAGCAGCTGGTTCGCCGGTGAGGCATCAAAATCTTCCGAAACCCGGCTTGA TAACAAGGGGACTTGTTGCTCACCCATCTGCTGATGCTAGTATCCCTGACATCCCAGCTGTAAAGGATAAGAGGAAAGAAGTAATCGTGATCAGCGATGG ACTCGAACCCTCCGGTCAGGTGGATGATGAATGCTTTCAGATTGACCACAGCAACAAGGCAGCAGCAAGTTTGTTGGCGAGGGATGAAATTGTTCCCAAA TCCGGTTTGATGTCAAGGAATAACACTGCTGGCAACTCCTTAGTCGTTCCTCACTCCGTCCAGTGA
AA sequence Show only first row Show all	>Lus10003404 pacid=23169617 polypeptide=Lus10003404 locus=Lus10003404.g ID=Lus10003404.BGIv1.0 annot-version=v1.0 MVRVASSSSEQHTLPGSPNAGIPSTSLVSSPPKVQQACHTLGSCAAKLQATVIDPLPNALQVFESLSAKAPSNVDRPVGNWDEGNVDVLHSSSNASVPEP SAQQGRQCFQTGQSSKVAAGSPVRHQNLPKPGLITRGLVAHPSADASIPDIPAVKDKRKEVIVISDGLEPSGQVDDECFQIDHSNKAAASLLARDEIVPK SGLMSRNNTAGNSLVVPHSVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003404 [exp]	0	1
AT1G42430			unknown protein		Lus10021819 [exp]	10.1	0.6621
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024707 [exp]	234.5	0.5221

Compare expression of checked genes

Lus10003404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.