Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64220 771 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 733 / 0 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT2G22300 540 / 7e-175 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT1G67310 328 / 5e-96 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT4G16150 275 / 7e-78 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 273 / 2e-77 CAMTA calmodulin binding;transcription regulators (.1) AT2G25600 50 / 1e-05 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G37500 47 / 9e-05 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G20350 47 / 9e-05 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G32500 47 / 0.0001 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036162 [exp] 1686 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10041704 [exp] 555 / 0 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 546 / 1e-177 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003119 [exp] 363 / 1e-109 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 360 / 1e-106 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10016873 [exp] 291 / 2e-83 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 289 / 1e-82 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 262 / 6e-73 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 164 / 4e-41 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093400 [exp] 664 / 0 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.005G075100 [exp] 664 / 0 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 471 / 5e-149 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.003G170600 [exp] 357 / 1e-106 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.001G057800 [exp] 347 / 7e-103 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G141700 [exp] 298 / 1e-85 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 293 / 5e-84 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 100 / 2e-25 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.018G077766 [exp] 48 / 4e-05 AT1G03670 152 / 4e-39 ankyrin repeat family protein (.1) Potri.002G178500 [exp] 46 / 0.0001 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10003405 pacid=23169613 polypeptide=Lus10003405 locus=Lus10003405.g ID=Lus10003405.BGIv1.0 annot-version=v1.0 ATGGCGGATCGTGGATCGTTTGGACTGGCCCCTCGATTAGACATCCAACAACTGTTTATTGAAGCACAACACCGATGGTTGCGTCCTGCTGAAATTTGTG AGATCCTCCGTAATTACGAGAAATTCCATATTTCAACAGAACCTCCAAACAAGCCAGCAAGTGGCTCTCTTTTTCTCTTTGACCGGAAGGTCTTGAGATA TTTTCGAAAAGATGGACATAATTGGCGGAAGAAAAAGGATGGCAAAACTGTCAAGGAAGCTCATGAGAAGCTGAAGGTTGGAAGTGTTGACGTGTTACAC TGTTATTATGCACATGGAGAGGAGACCGAAAGTTTTCAAAGGCGCAGCTACTGGATGCTTGAACACATGCTGTGTTTCAGTGTTGTGCTCTATTGTTACT TTACGTTTCCGTCTTGGATCTTTCTTGTTCTCATGGCTCTTACAATCTTGCAGGGAACTTATGCATATAGTATTCGTCCACTACTTGGAAGTGAAGTTCT CTCGTGTTTGTATGCTTATGCTGGTCACTCATCTTTACATCAGGGTAACAGGACACACAGCAGTCCATCAAACAGCCTTGTCAATCACAACAGATCCGGG AATACTGATTCGATTAGTCCATCAAGTACCCTTTCATCCGCATTTGAAGATGCCGACTCAGCTGATAGCCATCAAACAACAGGGACCCACTCATTCTACA GGCCACAACCACTGCAGAATAGTGTTACTATCGACAAAGTGGATGTTGGTCCATCAAGTACTCATCTGTCACACTCTCGTGCAGGATCTGGAAGTCCCGT TGCATACAGACATGGGAGTGGATCTGGAATTAATGATAGTAGTTCCAACATAATCAATTCACAGGGTTTAACATCCTGGGAAGATGTTTATGAACAATCT ACAAGAGGTTTTGATAACACACCATTGCGTGCAGCACTAAATTCCACACATCTGGGTAATTATGGTGTTGGAGCAAATTTGATGCAGCAGGTATCCACTG GGAGCACTACCCAAGTTAACTTTGATGGCTCTTTGCCAATTCATTCAACTTGGCAGATTCCTGCCGGAGATAGTTCTTTACACATTCCCCATGGGATGGA CGCAACATTTGATTTGGATCTGACATACGATTTTGGCACGAGGTTATTTGATCAGAGAACACAGGATTTTGGCACACACAACACATTGGAGCCATACTTT ACTGGGTCTCTTCAGCAACATGACGAACTTTTACATAACAACCTCCAAATAGAGCTCCTCAATTCAGAACTACAGTATGCTACAGGCTCAAATCTCCCAA TTGAAGGAGCTGCAGACGGAAATGGAAGATATGCCTTATTTGCAAAGAAACCCTTGTTGGGTGAAGAGGGCTTGAAGAAAGTTGATAGCTTTTCTCGATG GGTTAGTAAGGAACTTGGAGAAGTGGATGATTTAAATATGAAGTCCTCATCTGGCATTGCATGGAACAATGTTGAATGTGGAAATGTAGCTGATGAGTCG GTTTTGAGTCCCTCTTTGTCACAAGACCAGCTTTTCAGCATAATGGATTTTTCACCTAAGTGGGCATATGCAGACTCAGAGACAGAGGTTCACATTGTTG GAATGTTCTTGAAGAGTCAAGAAGAGGTCCAAAAGTGCGAATGGTCTTGCATGTTTGGAGAAGTTGAAGTTCGAGCTGAGGTTTTGGCTGATGGGATTCT TTGTTGCTTTGCTCCACCTCATGGTTTTGCCAGGGTTCCACTTTATGTTACATGTTCGAATAGGGTGGCATGCAGTGAAGTGCGAGAATTTGATTATCTT GTTAACTCAGTAGGAGATGTCAATGTTAGAGGTGTATATGGAGGTAATGCTCCTGAAATGTGGCTTCATCTACGACTTGAGAAGTTGTTGTCAGTCAAAC CTTCCACAGGATTGAGTCATACCCTTGATGTTGCTCGAGCAAAACAGAAGTTAGTTCGAAAAATCATGTTGCTGAAGGAGGAAGATGACAATCACCAAAT GATAGAGCCGACGTCTGAGGAAAGTTTGTCTCATGTTGAAGTTAAACGAAAACTTCTATACAAGCTTATCAAAGAAAAGCTGTATGCATGGCTTCTTCAC AAGGTACTAGAGAGTGGCAAGGGACCATGTGTCTTGGATGATGATGGGCAAGGTGTCCTACATTTAGCTGCTGCGCTTGGTTGGGACTGGGCCATAAAGC CAACTGTGGCTGCCGGAGTGAGCATCAATTTCCGTGATGTAAATGGATGGACTGCCCTTCATTGGGCTGCTTACTGTGGCAGGGAGCAGACAGTTGCCGT CCTTGTATCATGGCGTGCTGCTCCTGGGGCATTGACAGATCCATCTCCTGAATTCCCGTCTGGTAGAACTGCAGCTGAACTTGCCTCTGGCAACGGACAC AAAGGCATCTCTGGTTTTCTTGCGGAGTCATTTTTGACCAGCTACCTATCAACCCTAACAGTGAAAGAGCAGAAGGATGATGGGGAAAATGTTGTGCAGA CAATTGAAGAGCGAACAGCGACTCCATTGAATGGAAATGATGTTCCAGATGCATTATCACTAAAGGATTCACTTAGTGCTATACGTAACGCTACACAAGC TGCTAATAGGATATATCAAGTATTCAGGATGCAGTCTTTCCAGCGAAAACAATTGAGTGAAGAGCATGAGAGTGATGAATTTGGTTTGTCAGATGAGCAC GCCCTATCTCTTCTAGCAGGGAATTCTCGCAGACCAGTGTACTCGAATGGAAAGGCTCATGCTGCTGCGACCCAAATCCAAAAGAAATTCCGTGGTTGGA AGAAGAGGAGGGAGTTTCTGATTATCAGGCAGAGAATTGTTAAAATCCAGGCACATATTAGAGGACATCAGGTGAGGAAACAGTATAAAACAGTGGTTTG GTCAGTGGGAATATTGGAGAAGATAATATTGAGGTGGAGACGTAAAGGAAGTGGGTTGCGTGGATTCCGAAGGGATGCAATGATAGAGGATTTGCCCAGT CCACAAAATGTGCATCCAAAGGAGGATGACGACTACGATTATCTCAAGGAAGGAAGGAAACAGAATGAAGAAAGGGTAGAAAAAACACTAAACAGGGTCA AATCCATGTTTCATGATCCGAACGGACGAGCTCAGTACAGAAGGCTTCTTACTGTCGTTGAAGGACTCAGGGAAAACCAGGCATGTAGTAGCATTCTTAA CCACCCCCAAGACGAAACTGAAGAAGGCCAAGACGAAGAGAGTTCACAACAACTAGCAGATTTCGACTCGCTTTTGGACGATGATACCTTCATGTCACTA GCATTCGACTAA
AA sequence Show only first row Show all	>Lus10003405 pacid=23169613 polypeptide=Lus10003405 locus=Lus10003405.g ID=Lus10003405.BGIv1.0 annot-version=v1.0 MADRGSFGLAPRLDIQQLFIEAQHRWLRPAEICEILRNYEKFHISTEPPNKPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLH CYYAHGEETESFQRRSYWMLEHMLCFSVVLYCYFTFPSWIFLVLMALTILQGTYAYSIRPLLGSEVLSCLYAYAGHSSLHQGNRTHSSPSNSLVNHNRSG NTDSISPSSTLSSAFEDADSADSHQTTGTHSFYRPQPLQNSVTIDKVDVGPSSTHLSHSRAGSGSPVAYRHGSGSGINDSSSNIINSQGLTSWEDVYEQS TRGFDNTPLRAALNSTHLGNYGVGANLMQQVSTGSTTQVNFDGSLPIHSTWQIPAGDSSLHIPHGMDATFDLDLTYDFGTRLFDQRTQDFGTHNTLEPYF TGSLQQHDELLHNNLQIELLNSELQYATGSNLPIEGAADGNGRYALFAKKPLLGEEGLKKVDSFSRWVSKELGEVDDLNMKSSSGIAWNNVECGNVADES VLSPSLSQDQLFSIMDFSPKWAYADSETEVHIVGMFLKSQEEVQKCEWSCMFGEVEVRAEVLADGILCCFAPPHGFARVPLYVTCSNRVACSEVREFDYL VNSVGDVNVRGVYGGNAPEMWLHLRLEKLLSVKPSTGLSHTLDVARAKQKLVRKIMLLKEEDDNHQMIEPTSEESLSHVEVKRKLLYKLIKEKLYAWLLH KVLESGKGPCVLDDDGQGVLHLAAALGWDWAIKPTVAAGVSINFRDVNGWTALHWAAYCGREQTVAVLVSWRAAPGALTDPSPEFPSGRTAAELASGNGH KGISGFLAESFLTSYLSTLTVKEQKDDGENVVQTIEERTATPLNGNDVPDALSLKDSLSAIRNATQAANRIYQVFRMQSFQRKQLSEEHESDEFGLSDEH ALSLLAGNSRRPVYSNGKAHAAATQIQKKFRGWKKRREFLIIRQRIVKIQAHIRGHQVRKQYKTVVWSVGILEKIILRWRRKGSGLRGFRRDAMIEDLPS PQNVHPKEDDDYDYLKEGRKQNEERVEKTLNRVKSMFHDPNGRAQYRRLLTVVEGLRENQACSSILNHPQDETEEGQDEESSQQLADFDSLLDDDTFMSL AFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	0	1
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	1.4	0.9386
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	2.0	0.9371
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	3.0	0.9358
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	3.3	0.9040
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	3.9	0.9302
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	4.4	0.8976
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	4.5	0.9355
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	4.6	0.9126
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	5.7	0.8985
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	6.5	0.9003

Compare expression of checked genes

Lus10003405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.