Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22200 323 / 2e-108 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G36050 281 / 3e-91 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 140 / 1e-37 Endoplasmic reticulum vesicle transporter protein (.1) AT3G20560 64 / 1e-10 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 63 / 2e-10 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT4G27080 59 / 3e-09 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT2G13840 45 / 0.0001 Polymerase/histidinol phosphatase-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036158 [exp] 384 / 2e-130 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 303 / 5e-99 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 168 / 1e-48 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 132 / 7e-35 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 128 / 5e-33 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 112 / 2e-27 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036157 [exp] 96 / 2e-21 AT2G13840 517 / 0.0 Polymerase/histidinol phosphatase-like (.1) Lus10021024 [exp] 78 / 2e-15 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206100 [exp] 345 / 1e-116 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 330 / 3e-110 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 295 / 9e-97 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 277 / 1e-89 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 132 / 8e-35 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 128 / 3e-33 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.011G135500 [exp] 61 / 6e-10 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 60 / 1e-09 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.001G206400 [exp] 50 / 3e-06 AT2G13840 538 / 0.0 Polymerase/histidinol phosphatase-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10003406 pacid=23169618 polypeptide=Lus10003406 locus=Lus10003406.g ID=Lus10003406.BGIv1.0 annot-version=v1.0 ATGACCGCGGAGCAGACGGTAGCGTTGAAGGCTGTGGCGGATTGGGTGTATTTGGATCAGCAACAGCAGCATGCCTGCCTTGATGATTTCGGGGTTCAGA CAACCTTAGGGGACAAAATTGTCTTCGATTTACATTCTCATTCTAACAACAGTGTGGCTTCTTGTCCCCTTCTAAGCTCGTCGAGAGGGCTCATGTTAAT GGGGTCCATCGAATATGCTGCTAAATGGCGCCCATCGGAATCACGGAACAAGCCTCCATCGGCTGCTCGTTCGGTCTCAAGAATAACACACCCGCCGAGT GGCCATCAACCCACTCCGCGAGCAGCAAGCATGGATGCGGTGGTACAAAAGCTCCGCAATTTGGACGCCTACCCGAAAATCAACGAGGATTTCTACAGCC GCACACTCTCCGGCGGCGTTATTACGCTCGTTTCTGCTATTGTCATGTTCCTCCTTTTCATATCTGAGTTCAGTTTGTACCTACATACTGTAACCGAGAC CAAGCTTTCGGTGGATACGGCAAGGGGCGAGAGCCTGCAGATCAATGTAAATCACCTTGCTCAGCTGTTTTCGTGGTTATCTGATCGTATGTTTGATGTA ACCTTTCCTGTCATTCCGTGTTTGCTGCTCAGCATTGATGCCATGGATATAAGTGGAGAAAAGCATTTTGATATTAGGCATGATATAACTAAAACCAGAA TTAATTCTCACGGTCACGTTATTGAAGCCAAACAGAGCGGGATTGGTGCACCGACGATTGAGAAGCCCTTGCAGAAGCATGGTGGAAGACTTGAACATGG TGAAACTTGTTGTGGTTTGTGTTTCGGCGCAGAAACATCAGATGACCATTGCTGCAACTCGTGTGAAGAAGTTCAAGAAGCATACAGAAAAAAGGGTTGG GCACTTACAAACTCAGATATGATTGACCAGGTTAGTCATAGGATCAATTCACTTGCTTTTGGCAACTACTTTCCTGGCGTTGTGAACCCCCTTGACGGTG GATGCATGACTCTCCGAATGGAATGCATCAGTATTTCATCAAGCTATGGTTGTGGTTGTGTTAAAGAATTCAACATTGAAGGGACAAGCACAAAGGTTGT CCCAACGATAAACACAAACACCAGGGGTCACACCATCTGCTCAAATCAGTATTCCGTGACGGAGCATATGAAGCATGTAGACTTTATCCGTGCAAACTCT TTCCCAGGAGTATTCTTCTTCTACGACTTGTCTCCAATCAAGGTACATTACATTGGTATTGATGTATGGCTCACTGAGTGA
AA sequence Show only first row Show all	>Lus10003406 pacid=23169618 polypeptide=Lus10003406 locus=Lus10003406.g ID=Lus10003406.BGIv1.0 annot-version=v1.0 MTAEQTVALKAVADWVYLDQQQQHACLDDFGVQTTLGDKIVFDLHSHSNNSVASCPLLSSSRGLMLMGSIEYAAKWRPSESRNKPPSAARSVSRITHPPS GHQPTPRAASMDAVVQKLRNLDAYPKINEDFYSRTLSGGVITLVSAIVMFLLFISEFSLYLHTVTETKLSVDTARGESLQINVNHLAQLFSWLSDRMFDV TFPVIPCLLLSIDAMDISGEKHFDIRHDITKTRINSHGHVIEAKQSGIGAPTIEKPLQKHGGRLEHGETCCGLCFGAETSDDHCCNSCEEVQEAYRKKGW ALTNSDMIDQVSHRINSLAFGNYFPGVVNPLDGGCMTLRMECISISSSYGCGCVKEFNIEGTSTKVVPTINTNTRGHTICSNQYSVTEHMKHVDFIRANS FPGVFFFYDLSPIKVHYIGIDVWLTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10003406 [exp]	0	1
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	2.4	0.9207
AT5G49880			mitotic checkpoint family prot...		Lus10007438 [exp]	5.5	0.8774
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	6.0	0.9088
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	6.6	0.9122
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	8.1	0.9037
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	10.4	0.9048
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	12.8	0.8985
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	13.0	0.9036
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	14.5	0.8989
					Lus10014678 [exp]	14.7	0.9005

Compare expression of checked genes

Lus10003406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.