Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003411 pacid=23177879 polypeptide=Lus10003411 locus=Lus10003411.g ID=Lus10003411.BGIv1.0 annot-version=v1.0 ATGACTGATTCTTCTCCTCTGGGTTCTCTGCCAGAATTGCCTATTGTTACTAAAGATGTGAGGATAACTCTCGTTCCAGTCCAAGATGCTGATACGCCTC CCAATTCTATTACTGTCCCGCCTACTCCCTCCCCAATGCCTAAAGAGTCCATCCCACTGATAGCTACCATGGTTTCTATTGCCCAGCGCATCAAGCAACA TGTTGATGCCCTAGCCTCAACAGAAGATAATTCGGAAGGTATTTATGGGGTTGAATCAACAAGCAACAAGCTGCTGGGAAAGTCGAGGAAGAAACAACAG CCGAAGAAAATGAGTAAGGTCAATCCGAATGGGACATATTTTGATCTTAATCATCCAGATATGCCAGAGGGAGCAATGGCTATTTCTCGGGTTTCAGAGA CAGTTAATGAAGATATGGCACATTCTAGTCAGAGTTGA
AA sequence Show only first row Show all	>Lus10003411 pacid=23177879 polypeptide=Lus10003411 locus=Lus10003411.g ID=Lus10003411.BGIv1.0 annot-version=v1.0 MTDSSPLGSLPELPIVTKDVRITLVPVQDADTPPNSITVPPTPSPMPKESIPLIATMVSIAQRIKQHVDALASTEDNSEGIYGVESTSNKLLGKSRKKQQ PKKMSKVNPNGTYFDLNHPDMPEGAMAISRVSETVNEDMAHSSQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003411 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	3.3	0.9317
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	4.2	0.9109
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	4.9	0.9103
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	5.3	0.9110
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	8.9	0.8818
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	10.5	0.9015
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	11.0	0.8761
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	11.5	0.8789
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	11.8	0.8909
AT1G09812			unknown protein		Lus10035787 [exp]	12.2	0.8932

Compare expression of checked genes

Lus10003411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.