Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023790 [exp] 79 / 4e-19 ND / Lus10026843 [exp] 68 / 1e-14 ND / Lus10024537 [exp] 68 / 1e-14 ND / Lus10006891 [exp] 64 / 4e-13 ND / Lus10021601 [exp] 51 / 4e-09 ND / Lus10022121 [exp] 48 / 8e-08 ND / Lus10028090 [exp] 40 / 0.0001 ND / Lus10032813 [exp] 39 / 0.0003 ND / Lus10012415 [exp] 0 / 1 AT2G25660 350 / 2e-106 embryo defective 2410 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003414 pacid=23177877 polypeptide=Lus10003414 locus=Lus10003414.g ID=Lus10003414.BGIv1.0 annot-version=v1.0 ATGGTGACAAAGATTCACAAGCCAATGCTTCGCCTCATCCACTTGTTTGCTCGTCACTGTATCTCGCACCACTCTTCTGCTTGCTCTTCCGATGCAATCA CTAACCGAGACTTGTACATCGTCTACTGTTTGGAGAAGAAGATCGATATGCATTTGGGAGACTTGACTCCTCCAGTGAAGTGTGCGCCTCACGACTTATA CCTGGAGGACTTGGAGAGGAATGGAGTGCTGCTCGATGAGGAGCTTGACACCATGACTCCAGGTCAGGGGTCCACTACTCAGGTTGCTGATGTGTCATCT CTGCAGGCTGCCATGGAGCAGCTTGCTATCCTGCAACAGAGTTCAGATTAG
AA sequence Show only first row Show all	>Lus10003414 pacid=23177877 polypeptide=Lus10003414 locus=Lus10003414.g ID=Lus10003414.BGIv1.0 annot-version=v1.0 MVTKIHKPMLRLIHLFARHCISHHSSACSSDAITNRDLYIVYCLEKKIDMHLGDLTPPVKCAPHDLYLEDLERNGVLLDEELDTMTPGQGSTTQVADVSS LQAAMEQLAILQQSSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003414 [exp]	0	1

Compare expression of checked genes

Lus10003414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.