Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31780 727 / 0 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) AT2G11810 509 / 5e-178 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT5G20410 492 / 3e-171 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026895 [exp] 946 / 0 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10016359 [exp] 491 / 1e-170 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10008048 [exp] 488 / 2e-169 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G266500 [exp] 778 / 0 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.018G016600 [exp] 759 / 0 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G063300 [exp] 496 / 8e-173 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G123000 [exp] 494 / 8e-172 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF04101 [flax] [poplar] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain CL0113 [flax] [poplar] GT-B PF06925 [flax] [poplar] MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase
Representative CDS sequence Show only first row Show all	>Lus10003418 pacid=23164864 polypeptide=Lus10003418 locus=Lus10003418.g ID=Lus10003418.BGIv1.0 annot-version=v1.0 ATGCAGCAGTCATCGGCGGTAGCTCAGGATTCCGCCCCCGTTTCCGATTTGGTAGCTCGATTCGGTCGTTTTGCGTTCAACCCCGCCGCAAATTCTAATG GGTCATGTTCTTTTCGCTCCAATTCCTTGTACTCTGATAGCAAGAAGATCATTAGCAGCAGCAGTAGGAGCAGGGTAGCGGCTTCCTTGAGACGCGGAGG AGGGGCCAGTTCGAGCCACAGGACGGCTTGGAATGAGTTCAATAGGTTTATTAGGTCTCACTGCGCTAGAATCCCTATCGGCTTCGCTTCTCTTCGGGTT GGCCCAACGGATTCTGCTACTACTAACAGCAACGGGTTGAGCGATGGGGGTGGTGATGTTTTGGCGGATGATGGGTTGCCTTTAAATGGTGTTGAGACTG AAAGTCCCAAAAAAGTTCTGATTTTGATGAGTGACACTGGTGGTGGCCATAGAGCTTCTGCTGAGGCTATCAAGCAAGCCTTCAATGAACAATTTGGTGA TGATTATCAGGTGTTCGTTACTGATCTGTGGTCAGAGCACACGCCGTGGCCGTTTAACCAACTGCCCAGGAGTTATAATTTTTTGGTTAAACACGGTACG TTGTGGAAAATGACATACTATGGAACTGCACCACGGCTAATTCATCAGTCAAATTTCGCTGCCACTTCAACATTTATAGCTCGGGAAGTTGCCAAAGGGT TAATGAAATACAAGCCTGACATTATCATTAGTGTTCACCCACTGATGCAGCATGTTCCTCTTCGTATCTTGCGGGCAAAGGGTCTTCTAAGGAAGATAGT ATTTACTACAGTAGTTACAGATCTTAGTACTTGCCATCCAACATGGTTCCATAAGCTTGTTACAAGATGTTATTGTCCATCGCCAGATGTAGCTAAGAGA GCTTTGAAAGCTGGGCTGGAGCCTGCCCAAATTAAGATCTTTGGTCTTCCTGTTCGACCTTCCTTTGTTAAACCTGTTGGACCAAAGGTGGAACTAAGGA GGGAACTGGGAATGGATGAAGACCTTCCTGCTGTTCTCTTGATGGGGGGCGGTGAAGGGATGGGACCCATTGAGGCAACTGCACGAGCACTTGGTGATTC CTTATATGACGAGGACCTTGGACAACCAACTGGCCAAGTCCTCGTCATATGTGGCCGCAATAAAAAGCTTGCCAATAGATTAGCATTAATCGATTGGAAG ATTCCTGTGCAGGTGAAGGGTTTTGTCACTAAAATGGAAGAATGCATGGGTGCATGTGATTGCATCATAACCAAGGCTGGCCCTGGAACAATTGCAGAAG CGATGATACGTGGCCTTCCGATTATTTTGAATGATTTCATTGCAGGACAAGAAGTAGGTAATGTACCGTACGTGGTGCAGAATGGATGCGGGAAGTTCTC GAAATCGCCCAAGGAAATAGCAAGCATAGTTGCTCAATGGTTTGGTCCGAAAAAAGAGGAACTTAAGGTGATGTCCCAGAATGCCCTCAAGTTGGCTAGA CCAGATGCAGTTGTGAAGATTGTCAACGATATGCATGAACTGGTTAGGCAGCGGAGTTATGTCCCTCACTTATCCTGTGCTGCAACTTAA
AA sequence Show only first row Show all	>Lus10003418 pacid=23164864 polypeptide=Lus10003418 locus=Lus10003418.g ID=Lus10003418.BGIv1.0 annot-version=v1.0 MQQSSAVAQDSAPVSDLVARFGRFAFNPAANSNGSCSFRSNSLYSDSKKIISSSSRSRVAASLRRGGGASSSHRTAWNEFNRFIRSHCARIPIGFASLRV GPTDSATTNSNGLSDGGGDVLADDGLPLNGVETESPKKVLILMSDTGGGHRASAEAIKQAFNEQFGDDYQVFVTDLWSEHTPWPFNQLPRSYNFLVKHGT LWKMTYYGTAPRLIHQSNFAATSTFIAREVAKGLMKYKPDIIISVHPLMQHVPLRILRAKGLLRKIVFTTVVTDLSTCHPTWFHKLVTRCYCPSPDVAKR ALKAGLEPAQIKIFGLPVRPSFVKPVGPKVELRRELGMDEDLPAVLLMGGGEGMGPIEATARALGDSLYDEDLGQPTGQVLVICGRNKKLANRLALIDWK IPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNDFIAGQEVGNVPYVVQNGCGKFSKSPKEIASIVAQWFGPKKEELKVMSQNALKLAR PDAVVKIVNDMHELVRQRSYVPHLSCAAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	0	1
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	4.2	0.8396
AT1G71090			Auxin efflux carrier family pr...		Lus10004059 [exp]	4.9	0.8121
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	12.4	0.7961
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	13.0	0.7772
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	13.0	0.7934
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	17.2	0.7991
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	18.7	0.7786
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	20.3	0.8075
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	25.2	0.7266
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	25.9	0.7900

Compare expression of checked genes

Lus10003418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.