Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25050 607 / 0 Major facilitator superfamily protein (.1) AT1G79710 565 / 0 Major facilitator superfamily protein (.1) AT5G25040 518 / 0 Major facilitator superfamily protein (.1.2.3) AT5G10820 403 / 3e-136 Major facilitator superfamily protein (.1) AT2G32040 192 / 2e-54 Major facilitator superfamily protein (.1) AT5G54860 108 / 3e-25 Major facilitator superfamily protein (.1) AT1G04570 104 / 1e-23 Major facilitator superfamily protein (.1) AT2G33280 83 / 6e-17 Major facilitator superfamily protein (.1) AT1G64890 78 / 3e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026893 [exp] 943 / 0 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 573 / 0 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10024099 [exp] 565 / 0 AT1G79710 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 442 / 9e-151 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10006106 [exp] 206 / 2e-59 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 199 / 5e-57 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 114 / 6e-27 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10023708 [exp] 88 / 4e-18 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10017090 [exp] 83 / 7e-17 AT5G54860 391 / 3e-133 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017100 [exp] 758 / 0 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 738 / 0 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 587 / 0 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 484 / 8e-168 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 483 / 3e-166 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 199 / 3e-57 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 124 / 2e-30 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 120 / 3e-29 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 94 / 5e-20 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 91 / 3e-19 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10003419 pacid=23164873 polypeptide=Lus10003419 locus=Lus10003419.g ID=Lus10003419.BGIv1.0 annot-version=v1.0 ATGGTAGAGGATGAGAATGAGGAAGCATGTGGTGGTGAGGTGATGGAGGTAAAGGGAGGAATTAGGGAATCTTGTTGTTGTCTTGAATGCTTGTGGACTC CGGTTAACTGGTTTAAAATGCTTGCTAAGGAGACCCACTGGAGCTTTGTCTATGGGGTTCTGATCGTTTATGGAATCAGCCAAGGGTTTGGAGGCGCTTT CTCTCGGGTTGGAACTGAGTATTATATGAAGGATGTTCAAAAGGTGCAGCCTTCCGAGTCCCAGATTTATCAAGGCCTCATCTCAATCCCGTGGCTTGTC AAGCCTATTTGGGGCCTCCTCACTGATGTAATCCCCATCTTAGGCTATCGTAGACGCCCTTATTTCATTCTAGCTGGACTGATTGGAATGGCTTCAATGC TTCTGTTGTCATTGGGTGAGAAGATGCACTTAGCCTTAGCTCTTTTGCTTTTGATAACTGGAAGTGCCAGTGTTGCAATAGCAGATGTAACGGTAGATGC CTGTGTGGCGCAACAGAGCAATGTCCATCATTCCCTTGCTGCTGATATGCAAAGCTTGTGTGCTTTGAGTTCATCCGTTGGAGCTTTAGTTGGATTTGGT TTCAGTGGCATATTTGTTCATCTCCTTGGCCCAAAGGGGGTTTTTGGACTGCTGGCAATCCCAGCTGGACTTGTATTGTCGGTAGGAGTTTTGCTTGAAG AGCCTTTCATGACTGATTTCAGTTACAGACAGGTAAGCCATAGGTTTCTTGCAGCTGGGAAGGCAATGTGGACCACCCTGAACTTCCCAGAAGTGTGGAG ACCATGTGTGTATATGTACTTATCTCTCGCTTTAAGTGTCAATATTGATGAAGGCTTGTTCTACTGGTATACCGACTCGAAGGATGGTCCATCTTTTTCT CAGGAAACTGTTGGTTTCATATTCTCAATAGCCTCGATCGGATCCCTCTTGGGGGCTATACTGTACCAGAATGTTCTGAAGGATCATCCTTTCCGCAACT TGCTTTTCTGGACTCAACTTCTGTCTGGTATCGCGGGGATGCTGGATTTGATTCTGGTGCTGAGATTGAACTTGAAATTCGGCATGCCTGACTACTTCTT TGCTGTGATTGATAAGAGTGTGATTCAGATGATTGGGAGGCTGAAATGGATGCCCCTTCTTGTCCTGAGCTCCAAGTTATGCCCTCCTGGAATTGAAGGA ACTTTCTTTGCTCTCCTTATGTCCATTGACAATCTTGGCACTCTCTCGTCTTCATGGGGAGGTGGAATCCTCTTGCACCTGATGAACGTCACTCGAACGA ATTTCACCAACCTCTGGCTCGTCATCATCATGAGAAATGTGTTGAGAATTGCCCCGCTTGTGTTACTATTTCTGATCCCTGCTGGTGATCCAAATGCTTC CATACTTCCAACCGAGATCATGGACGTCAAAGAAGGAACAGGGAATGCTGAAAATGGCAACTTGGAATTGGTCTCCTTGGTTAGTAGCACTGATGATACC GGTAAGTAG
AA sequence Show only first row Show all	>Lus10003419 pacid=23164873 polypeptide=Lus10003419 locus=Lus10003419.g ID=Lus10003419.BGIv1.0 annot-version=v1.0 MVEDENEEACGGEVMEVKGGIRESCCCLECLWTPVNWFKMLAKETHWSFVYGVLIVYGISQGFGGAFSRVGTEYYMKDVQKVQPSESQIYQGLISIPWLV KPIWGLLTDVIPILGYRRRPYFILAGLIGMASMLLLSLGEKMHLALALLLLITGSASVAIADVTVDACVAQQSNVHHSLAADMQSLCALSSSVGALVGFG FSGIFVHLLGPKGVFGLLAIPAGLVLSVGVLLEEPFMTDFSYRQVSHRFLAAGKAMWTTLNFPEVWRPCVYMYLSLALSVNIDEGLFYWYTDSKDGPSFS QETVGFIFSIASIGSLLGAILYQNVLKDHPFRNLLFWTQLLSGIAGMLDLILVLRLNLKFGMPDYFFAVIDKSVIQMIGRLKWMPLLVLSSKLCPPGIEG TFFALLMSIDNLGTLSSSWGGGILLHLMNVTRTNFTNLWLVIIMRNVLRIAPLVLLFLIPAGDPNASILPTEIMDVKEGTGNAENGNLELVSLVSSTDDT GK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25050			Major facilitator superfamily ...		Lus10003419 [exp]	0	1
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	5.3	0.8436
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Lus10042873 [exp]	8.1	0.8072
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	12.6	0.8346
AT2G15860			unknown protein		Lus10023852 [exp]	15.9	0.7859
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	16.9	0.8282
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	17.7	0.8339
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	18.8	0.8236
AT3G51580			unknown protein		Lus10025140 [exp]	19.3	0.7899
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	21.9	0.8282
AT3G03210			unknown protein		Lus10010965 [exp]	26.7	0.8153

Compare expression of checked genes

Lus10003419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.