Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31870 319 / 1e-109 ATGPX7 glutathione peroxidase 7 (.1) AT2G25080 312 / 5e-107 ATGPX1 glutathione peroxidase 1 (.1) AT4G11600 245 / 1e-80 LSC803, PHGPX, ATGPX6 glutathione peroxidase 6 (.1) AT2G31570 230 / 1e-75 ATGPX2 glutathione peroxidase 2 (.1) AT2G43350 230 / 4e-75 ATGPX3 glutathione peroxidase 3 (.1.2) AT1G63460 207 / 1e-66 ATGPX8 glutathione peroxidase 8 (.1) AT3G63080 205 / 9e-66 ATGPX5, MEE42 maternal effect embryo arrest 42, glutathione peroxidase 5 (.1) AT2G48150 200 / 6e-64 ATGPX4 glutathione peroxidase 4 (.1) AT1G65790 82 / 1e-16 ARK1 receptor kinase 1 (.1) AT1G65800 80 / 4e-16 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026887 [exp] 456 / 2e-163 AT4G31870 332 / 3e-116 glutathione peroxidase 7 (.1) Lus10042418 [exp] 357 / 2e-124 AT4G31870 329 / 2e-115 glutathione peroxidase 7 (.1) Lus10008499 [exp] 241 / 1e-78 AT4G11600 307 / 2e-106 glutathione peroxidase 6 (.1) Lus10008022 [exp] 238 / 1e-78 AT4G11600 301 / 1e-105 glutathione peroxidase 6 (.1) Lus10008537 [exp] 237 / 3e-78 AT4G11600 299 / 1e-104 glutathione peroxidase 6 (.1) Lus10027021 [exp] 236 / 9e-78 AT2G31570 266 / 2e-92 glutathione peroxidase 2 (.1) Lus10000603 [exp] 216 / 3e-70 AT4G11600 256 / 9e-88 glutathione peroxidase 6 (.1) Lus10000601 [exp] 213 / 9e-69 AT1G63460 256 / 2e-88 glutathione peroxidase 8 (.1) Lus10029651 [exp] 212 / 2e-68 AT2G48150 274 / 2e-95 glutathione peroxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265400 [exp] 344 / 2e-119 AT2G25080 343 / 6e-121 glutathione peroxidase 1 (.1) Potri.007G126600 [exp] 244 / 8e-81 AT2G31570 281 / 1e-97 glutathione peroxidase 2 (.1) Potri.003G126100 [exp] 244 / 3e-80 AT4G11600 307 / 9e-107 glutathione peroxidase 6 (.1) Potri.001G105200 [exp] 241 / 6e-80 AT4G11600 298 / 3e-104 glutathione peroxidase 6 (.1) Potri.001G105100 [exp] 219 / 5e-71 AT1G63460 283 / 5e-99 glutathione peroxidase 8 (.1) Potri.018G017500 [exp] 215 / 7e-70 AT2G25080 209 / 4e-69 glutathione peroxidase 1 (.1) Potri.014G138800 [exp] 209 / 2e-67 AT2G48150 271 / 1e-94 glutathione peroxidase 4 (.1) Potri.011G036600 [exp] 88 / 8e-19 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 86 / 3e-18 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 84 / 4e-18 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00255 [flax] [poplar] GSHPx Glutathione peroxidase
Representative CDS sequence Show only first row Show all	>Lus10003421 pacid=23164879 polypeptide=Lus10003421 locus=Lus10003421.g ID=Lus10003421.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTTTAATGTTCGCTGCAACTCTCTCCTCTCCTTCGCACATGTACATCGCAGAAAGGCCAAGTTGTTATTCACCCAGCCAGCAGTCGTTTG GCGTTTCCGTCGCATCAGCAAGGTCGTCGCTGCTCTTCCCCTCTTCAAAATCGGGGTTTCTGCGACATGGGTTGTCTTTAAAATCCCAGAATTCAGCTGG GCTTGTTCGAAAGAATCCTTCTTTCCGCGTTTTTGCCAGAGCTGCCACCGAGAAATCAATCCACGACTTCACTGTAAAGGACATTGATGGTAAAAACGTG TCTCTTAGCAAATTCAAAGGCAAAGCTCTGTTGATTGTCAATGTTGCTTCCAGATGTGGTTTGACATCTTCCAACTATTCAGAACTATCGCACGTTTATG AGAAGTACAAGACACAAGGATTTGAAATCCTAGCTTTCCCTTGCAATCAGTTTGGAGGGCAAGAGCCAGGATCGAACCCGGAGATCAAGCAGTTTGCTTG TACCAGATTCAAAGCTGAATTTCCTATATTTGACAACGTTGACGTGAATGGGCCGAGCACAGCACCAGTTTACCAGTTTCTGAAGTCGAGTGCTGGGGGA TTTTTAGGTGATTTGATCAAGTGGAACTTTGAGAAGTTCTTGGTGGACAAGAATGGTAAAGTTGTGGAACGGTATGCCCCGACGACATCACCTTTCCAAA TCGAGGTGTGGGAGCTATGGAAGGCAGGCAGAGCCACAGAGGTGATCGATTCTTCGCTGTCACTTGACAACTCGCATGAGGCGCTGAGATGTATTAAAAT CAGACTGTTGTGCGTGGAAGAGAATGCAGCAAACCGGCCCGATATGCAGACCGTGGTTCTCATATTAAACAGTGAAACATCATCTGTCCCATTTCCTCAA AAACCTGCATTTGTTGTTTCCGCGATATCCAAGGTATCGCCTACAATAGAACGAACATGCTCTGTAAATGAGATGTCATTTTCAGGGATCCTTAGAAAGA GAGAAACTTTGAAGTAG
AA sequence Show only first row Show all	>Lus10003421 pacid=23164879 polypeptide=Lus10003421 locus=Lus10003421.g ID=Lus10003421.BGIv1.0 annot-version=v1.0 MASSLMFAATLSSPSHMYIAERPSCYSPSQQSFGVSVASARSSLLFPSSKSGFLRHGLSLKSQNSAGLVRKNPSFRVFARAATEKSIHDFTVKDIDGKNV SLSKFKGKALLIVNVASRCGLTSSNYSELSHVYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDNVDVNGPSTAPVYQFLKSSAGG FLGDLIKWNFEKFLVDKNGKVVERYAPTTSPFQIEVWELWKAGRATEVIDSSLSLDNSHEALRCIKIRLLCVEENAANRPDMQTVVLILNSETSSVPFPQ KPAFVVSAISKVSPTIERTCSVNEMSFSGILRKRETLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10003421 [exp]	0	1
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	1.4	0.9026
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	2.0	0.9216
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	3.9	0.8768
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	5.5	0.8926
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	6.7	0.8628
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	12.0	0.8552
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	13.6	0.8804
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	14.1	0.8357
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	17.5	0.8256
AT4G38225			unknown protein		Lus10026560 [exp]	18.5	0.8710

Compare expression of checked genes

Lus10003421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.